CV884305

Overview
NameCV884305
Unique NameCV884305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 6.283e-97
Identity = 163/202 (80.69%), Postives = 180/202 (89.11%), Query Frame = -2
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYC VG+DK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AGD +W++RYILERITE AGVVL+ DPKPIQGDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI+AYGEGNERRLTG HETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPYVVT+++AETTILW+P
Sbjct:  211 GPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEP 412          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 8.206e-97
Identity = 162/202 (80.20%), Postives = 178/202 (88.12%), Query Frame = -2
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYC  GADK++GRDI D+HYKAC+YAGINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGNERRLTGKHETA IN F WGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  213 GPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 414          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.711e-94
Identity = 160/202 (79.21%), Postives = 176/202 (87.13%), Query Frame = -2
Query:  252 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 857
            GPYYC VG+DK++GRDI D+HYKACLYAGI ISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPIQGDWNGAG H NYST SMR DGGF+VIKKAI  L LRH  HIAAYGEGNERRLTG HETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY VT+++AETTILW+P
Sbjct:  217 GPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYTVTALLAETTILWEP 418          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.808e-83
Identity = 143/161 (88.82%), Postives = 153/161 (95.03%), Query Frame = -2
Query:  375 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASI 857
            GPYYCG GA+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP++GISAGD+LWVARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG+EVIK+AIEKL  RH+EHIAAYGEGNERRLTG+HETADI+TF WGVANRGASI
Sbjct:  155 GPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSIGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKQAIEKLEKRHNEHIAAYGEGNERRLTGRHETADISTFSWGVANRGASI 315          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 2.482e-77
Identity = 136/201 (67.66%), Postives = 155/201 (77.11%), Query Frame = -2
Query:  255 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 857
            GPYYCG G  K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L R+ E  GV +SF PKP+QGDWNGAGAH NYST +MR  GG + I+ AIEKL  RH EHIA YGE NE RLTG+HET  I TF  GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETTIL K
Sbjct:  154 GPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLIRVAEQWGVKVSFHPKPLQGDWNGAGAHTNYSTLAMREPGGMKYIEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTFSSGVANRGASIRVPRHVANKGYGYLEDRRPASNIDPYRVTGIIIETTILDK 354          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.234e-77
Identity = 132/196 (67.35%), Postives = 156/196 (79.59%), Query Frame = -2
Query:  270 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 857
            GPYYCGVGA K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GDQLW+ARY L R+ E  GV +SF PKP++GDWNGAG H N STK MR  GG + I++AIEKL  RH+EHI  YG  NE+RLTG+HETA + +F  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  156 GPYYCGVGAGKVYARDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDQLWMARYFLHRVAEEFGVKISFHPKPLKGDWNGAGCHTNVSTKDMRVPGGMKYIEQAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMTSFSSGVANRGASIRIPRPVAKEGFGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 5.530e-77
Identity = 134/199 (67.34%), Postives = 155/199 (77.89%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCG G  K + RD++++HY+ACLY+GINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E   V +SF PKP+QGDWNGAG H NYSTK+MR  GG +VI++AIEKL  RH EHIA YGE N+ RLTG+HET  I  F  GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+I ETT+L
Sbjct:  154 GPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWAVKVSFHPKPLQGDWNGAGCHTNYSTKAMREPGGMKVIEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTSIIVETTLL 352          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.432e-77
Identity = 135/201 (67.16%), Postives = 157/201 (78.11%), Query Frame = -2
Query:  255 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 857
            GPYYCG G  K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  GV +SF PKP++G+WNGAG H N+STK+MR  GG + I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I+ F  GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+IAETTIL K
Sbjct:  154 GPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGVKVSFHPKPLKGEWNGAGCHTNFSTKAMREAGGMKFIEDAIEKLAKRHDEHIAVYGEDNDLRLTGRHETGHISNFSSGVANRGASIRVPRHVASQGYGYLEDRRPASNIDPYRVTSIIAETTILDK 354          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.114e-76
Identity = 128/196 (65.31%), Postives = 153/196 (78.06%), Query Frame = -2
Query:  270 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 857
            GPYYCGVG  K + RD+V++HY+ACLY+GINISGIN EVMP QWE+QVGP  GIS  D+LW++RY+L R+ E  G+ +SF PKP+QGDWNGAG H N STKSMR  GG + I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I +F  GVANRG SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  147 GPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGPCEGISMADELWMSRYLLHRVAEEFGIKISFHPKPLQGDWNGAGCHTNVSTKSMREPGGMKHIEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMTET 342          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.985e-76
Identity = 129/196 (65.82%), Postives = 154/196 (78.57%), Query Frame = -2
Query:  270 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 857
            GPYYCGVGA K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GI+  DQLW+ARY L R+ E  GV +S  PKP++GDWNGAG H N STK MR  GG + I+ AIEKL  RH+EHI  YG  NE+RLTG+HETA ++TF  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  158 GPYYCGVGAGKVFARDVIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGIAMADQLWIARYFLHRVAEEFGVKVSLHPKPLKGDWNGAGCHTNVSTKLMRAPGGMKYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNIDPYLVTGIMCET 353          
The following BLAST results are available for this feature:
BLAST of CV884305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_ORYSJ6.283e-9780.69Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA2_PEA8.206e-9780.20Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_HORVU1.711e-9479.21Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA3_LUPAN8.808e-8388.82Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA_AMAMU2.482e-7767.66Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_CANGA4.234e-7767.35Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_HEBCY5.530e-7767.34Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_AGABI9.432e-7767.16Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_YARLI6.114e-7665.31Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_KLULA7.985e-7665.82Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002E09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884305 ID=CV884305; Name=CV884305; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTGACAAAGGATTGACCCTTCCATAATGTTATTAAATTAAATGTTT
ACATTATTCAACCCAATATGACAGCAGGAAGCAAAGAACCCACTGTTGCA
AATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAATA
AAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAGT
AAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATTC
ATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATAT
GGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTTC
TTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACAC
CCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCGG
CGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTCC
AAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTCA
TCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACCC
TGAATTGGCTTGGGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAAT
CCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATTC
CAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCCA
TTGATGCCACTGATGTTGATTCCTGCATATAGACAGGCCTTGTAATGGGA
GTCCACAATGTCACGCCCCCAAGCTTTGTCAGCACCAACACCACAGTAGT
ATGGTCCC
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