CV884305

Overview
NameCV884305
Unique NameCV884305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 273.478 bits (698), Expect = 1.079e-72
Identity = 127/203 (62.56%), Postives = 154/203 (75.86%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  GD LW+AR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  159 GPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.409e-72
Identity = 126/203 (62.07%), Postives = 154/203 (75.86%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGADKA+GRDIV++HY+ACLYAGI +SG N EVM  QWE+QVGP  GI  GD LW++R+IL R+ E  G++ SFDPKPI G+WNGAG H N+STK+MR+DGG + I+ +IEKLG RH  HI AY    G  N R LTG HET++IN F  GVANRGASIR+ R   ++ KGYFEDRRP++N DPY VT  +  T +L
Sbjct:  188 GPYYCGVGADKAYGRDIVEAHYRACLYAGIELSGTNAEVMAAQWEYQVGPCEGIQMGDHLWISRFILHRVCEDFGIIASFDPKPIPGNWNGAGCHTNFSTKAMRDDGGLKYIEDSIEKLGKRHQYHIRAYDPKGGLDNARALTGHHETSNINEFSAGVANRGASIRIPRSVGQDKKGYFEDRRPSANCDPYAVTEALVRTCLL 390          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 272.707 bits (696), Expect = 1.841e-72
Identity = 128/203 (63.05%), Postives = 153/203 (75.37%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  159 GPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.841e-72
Identity = 127/203 (62.56%), Postives = 154/203 (75.86%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E +GYFEDRRP++N DPY VT  I  T +L
Sbjct:  159 GPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKRGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.841e-72
Identity = 129/203 (63.55%), Postives = 149/203 (73.40%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGA+K + RDIVD+HY+ACLYAGI +SG N EVMP QWEFQVGP  GIS GD LW+AR++L RI+E  G+V + DPKP+ GDWNGAGAH N STK+MR DGG   I+KA+ KL   H  HI AY    G+ N RRLTGKHET+ IN F  GVANRG SIR+ R    +GKGYFEDRRP+SN DPY V   I  T  L
Sbjct:  165 GPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMPGDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQDNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSSNCDPYSVVEAILRTICL 367          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 2.404e-72
Identity = 128/200 (64.00%), Postives = 152/200 (76.00%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDG-GFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGA K + RD +++HY+ACLYAGI ISGIN EVMP QWEFQVGP  GI  GD LW+AR++L RI E  G+  S  PKP++GDWNGAG H+NYSTK MR  G G   I+ AI+KL  +H EHIA YGE N+ RLTGKHETA + TF  GVANRGASIR+ R    +G GY EDRRPASN+DPY VT+++ ETT+L
Sbjct:  157 GPYYCGVGAGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGITPSLHPKPLKGDWNGAGCHSNYSTKDMRTPGKGMAAIEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 3.140e-72
Identity = 128/203 (63.05%), Postives = 153/203 (75.37%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I++AIEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  159 GPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNTRRLTGFHETSNINDFSAGVANRGASIRIPRTGGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 5.356e-72
Identity = 127/203 (62.56%), Postives = 154/203 (75.86%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G + I+++IEKL  RH  HI AY    G  N RRLTG HET++IN F  GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  159 GPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLL 361          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 6.995e-72
Identity = 122/196 (62.24%), Postives = 149/196 (76.02%), Query Frame = -2
Query:  270 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 857
            GP+YCGVG  + + RDIV++HYKACLYAGINISGIN EVMP QWE+QVGP  GI  GDQLW++R++L RI E  GV +SF PKPI GDWNGAG H N STK  R +GG + I+  +EK   RH EHIA YG+ N+ RLTG+HET  I+ F +GVA+RGAS+R+ R     G GYFEDRRPAS++DPY+VT +I ET
Sbjct:  160 GPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVYGDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355          
BLAST of CV884305 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 6.995e-72
Identity = 128/203 (63.05%), Postives = 152/203 (74.88%), Query Frame = -2
Query:  261 GPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 857
            GPYYCGVGADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  GI  GD LWVAR+IL R+ E  GV+ +FDPKPI G+WNGAG H N+STK+MR + G   I++AI+KL  RH  HI AY    G  N RRLTG HET++IN F  GVANR ASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  159 GPYYCGVGADKAYGRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLRCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRIVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
The following BLAST results are available for this feature:
BLAST of CV884305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_MOUSE1.079e-7262.56Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_SQUAC1.409e-7262.07Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_BOVIN1.841e-7263.05Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_ACOCA1.841e-7262.56Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA2_DROME1.841e-7263.55Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_CRYNE2.404e-7264.00Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_PIG3.140e-7263.05Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_CANFA5.356e-7262.56Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_SCHPO6.995e-7262.24Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_RAT6.995e-7263.05Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002E09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884305 ID=CV884305; Name=CV884305; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTGACAAAGGATTGACCCTTCCATAATGTTATTAAATTAAATGTTT
ACATTATTCAACCCAATATGACAGCAGGAAGCAAAGAACCCACTGTTGCA
AATACAGGGGCAGAGATTGAAACAAGACAAAAGCTGAACTACTACTAATA
AAGCATCCTTAGCAGAACACAATTCTGTCGTGAACTCGTGAATCCTGAGT
AAAGCCAGCAGATCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATTC
ATGGCTTCCACAGAATAGTGGTTTCTGCAATCATGGAGGTGACAACATAT
GGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAAAGTAACCCTTTCCTTC
TTTCTCTGTGTCTCGTCCAACACGGATTGATGCCCCACGGTTAGCAACAC
CCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTTTGCCAGTGAGTCGG
CGTTCATTGCCTTCACCATATGCGGCAATGTGCTCACTGTGCCTCAGTCC
AAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCCTCCATCGTTCCTCA
TCGACTTGGTGCTGTAATTTGCGTGAGCACCAGCTCCATTCCAGTCACCC
TGAATTGGCTTGGGATCGAAAGAAAGCACAACTCCAGCAATCTCTGTAAT
CCTCTCTAAAATATAGCGGGCAACCCACAACTGATCTCCAGCAGAAATTC
CAACAGCGGGACCAACTTGGAACTCCCACTGCCCCGGCATGACTTCTCCA
TTGATGCCACTGATGTTGATTCCTGCATATAGACAGGCCTTGTAATGGGA
GTCCACAATGTCACGCCCCCAAGCTTTGTCAGCACCAACACCACAGTAGT
ATGGTCCC
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