CV884298

Overview
NameCV884298
Unique NameCV884298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.308e-17
Identity = 49/118 (41.53%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  190 SGASAKSSEAAF-------VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDE-RDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGIAASGK 519
            S ++A SS ++F       + KT++ + +VI+SK++C YC   K++FK L + P VVELD+    G  +Q  L  + GQ TVP VF+ GKHIGG  DTV+    G L +L+   A+GK
Sbjct:   54 SSSAASSSSSSFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDL-ELMLAEANGK 170          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.308e-17
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  226 VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            +++TIS + +VIFSK+ C YC  AK +F+++N+   VVELD  + G   QDAL +M G RTVP++F+NG  IGG+ DT   ++ GKL  L+
Sbjct:   57 IQETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  220 AFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            A  ++ +S + + +FSK+YCP+C   K +  +L      VELD   DG  IQ AL E  GQRTVP VFI  KHIGG D T   +  GKL  LL
Sbjct:    4 AKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLL 96          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  226 VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPH----VVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            V+  I+ ++I + SK+YCPYC  A +   E    P     V++L++  +G +IQ AL E+ GQRTVP ++INGKHIGG+DD  E  E+G+L +LL
Sbjct:   10 VKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 104          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  208 SSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGIA 507
            SS  +FV+  ++ + +V+F+KSYCPYC   + V  +  +   V ++D  ++G  IQ  L +  GQRTVP +FI+ KH+GG+ D    ++ G+L  L   A
Sbjct:    2 SSVESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSLFNTA 101          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 9.076e-14
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  196 ASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            ++A +   A ++  I  H +VIFS+S C  C   K +FK L +   V+ELD+ +DG  ++  L E+  +  +P VF+  + IGG   T++AY+ G+L +LL
Sbjct:   49 STATADSRALLQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEGTLSELAAETDLPVVFVKQRKIGGHGPTLKAYQEGRLQKLL 149          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.022e-13
Identity = 36/93 (38.71%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  220 AFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            AFVEK IS++ + +FSKS+CP+C+ AK+   + +      ELD+ ++G +IQ  L E   Q TVP +F   + IGG+ D  +   SG L +++
Sbjct:    7 AFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: YZ73_CAEEL (Uncharacterized monothiol glutaredoxin F10D7.3 OS=Caenorhabditis elegans GN=F10D7.3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.883e-13
Identity = 39/128 (30.47%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  136 MISVLTLAIATLLFWASFSGASAKSSEAAF------VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAP-HVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            M+ +LT+ +A +      +  S K  +         +   + +HK++++SK+YCP+ +R K++     +    +VELD  +    +Q+ L +  G+ TVPQ+FI+GK +GG D+T    E G+L  LL
Sbjct:    1 MLRILTVVLALVTIATVHAELSKKKEDKTLKDLEDKIVNDVMTHKVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILKKYSGRTTVPQLFISGKFVGGHDETKAIEEKGELRPLL 128          
The following BLAST results are available for this feature:
BLAST of CV884298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRXC5_ARATH2.308e-1741.53Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GLRX2_PONAB2.308e-1747.25Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GLRX_SOLLC8.771e-1746.24Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX1_YEAST7.425e-1645.26Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GLRX1_SCHPO2.821e-1537.00Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
TRXR1_HUMAN9.076e-1435.64Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]
GLRX2_SCHPO2.022e-1338.71Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
YZ73_CAEEL5.883e-1330.47Uncharacterized monothiol glutaredoxin F10D7.3 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002E05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884298 ID=CV884298; Name=CV884298; organism=Citrus sinensis; type=EST; length=746bp
GACGTTATAATGAGAATTTATGCGCTAATAGGCATTTACAAAAACATCTA
AAAACCAACTCCGCTGCCTGCACCTCTTCTGCGCGGTCTCCGGTGCAGCA
TCAGACTCATCATGACGGCGAGAAGACTAACACCAATGATCTCAGTACTA
ACGTTAGCGATTGCGACGCTTCTCTTCTGGGCATCATTTTCCGGAGCTTC
TGCCAAATCTTCAGAAGCTGCTTTTGTCGAAAAGACTATCTCTTCCCACA
AGATCGTCATCTTCTCCAAGTCTTATTGCCCATATTGTAGGAGGGCTAAA
TCTGTATTCAAAGAGTTGAACATGGCTCCTCATGTAGTCGAGCTTGATGA
GAGAGATGATGGCTGGAACATTCAGGATGCCTTGGGTGAGATGGTTGGGC
AGCGCACTGTACCACAGGTGTTCATAAATGGAAAGCACATTGGAGGCTCA
GATGATACTGTTGAAGCATATGAAAGTGGGAAACTAGCTCAGCTTTTAGG
TATTGCAGCAAGTGGCAAAGATGATCTCTAATTGCTTCGAGATCAATGCC
AATTGGGGATCTGTCTAAAGCTTCGATGCACTGCCCTGAAGAATGAGGAT
GATCTCTGAGGCAATAATAGGATTTCTATTATTAGTATTCAGGGTAAGTA
CTTGTTGTGTAACTCTTTGTTTTACCTGGAAGTCAATTAGGGATATACAT
TAATCATAATAAGTAAGTCATCGTTATCAAATTTTAACCAAAAAAA
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