CV884283

Overview
NameCV884283
Unique NameCV884283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_HUMAN (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 104/192 (54.17%), Postives = 135/192 (70.31%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          +S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   27 YELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_BOVIN (40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 104/192 (54.17%), Postives = 135/192 (70.31%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          +S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   27 YELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 4.977e-54
Identity = 106/192 (55.21%), Postives = 133/192 (69.27%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YE GR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+  HY + +GR                          +S    +K E+R+K   + P +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct:   27 YEPGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLGR---------KKGAKLTPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 6.500e-54
Identity = 107/192 (55.73%), Postives = 133/192 (69.27%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            +ELGR  ANTKL   + +  +R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY  HY + +GR                          +S     K + RQ+   ++P +EEQF +GR+LACI+SRPGQCGR DGYILEGKELEFYM++++ KK K
Sbjct:   27 FELGRPAANTKLGPQR-IHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGR---------KRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKKAK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_SPOFR (40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.226e-53
Identity = 108/192 (56.25%), Postives = 134/192 (69.79%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR  ANTKL   + +  +R RGGN K+RALRLDTGN+SWGSE  TRK+RI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY  HY + +GR                          +S   ++K   RQ+   ++  +EEQF +GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct:   27 YELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR---------KKGAKLTEAEDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_DROME (40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.658e-52
Identity = 106/190 (55.79%), Postives = 133/190 (70.00%), Query Frame = -3
Query:  215 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK 784
            +ELGR  ANTKL S + V ++R RGGN K RALRL+TGN++W SE V RKTRI DVVYNASNNELVRT+TLVK++IV +DA PF+QWY  HY + +GR                          +S  V +K  +RQK   ++  +E+QF SGR+LACI+SRPGQCGR+DGYILEGKELEFY+KK++ KK
Sbjct:   27 FELGRPAANTKLGSGR-VHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGR-------KRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIKSKK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.957e-50
Identity = 108/195 (55.38%), Postives = 131/195 (67.18%), Query Frame = -3
Query:  206 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK--GKS 784
            YELGRQPA TK+   K VR +RVRGGN+K RALRL++GN++WGSEA T K+RIL+VVYNASNNELVRT T VK  I+Q+DA PF+Q+Y  HYG+DIG+                             H  ++ ++ Q    LD  I+E F SGRL A IASRPGQ GRADGY+LEGKELEFY K +Q+KK  GKS
Sbjct:   27 YELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALRLESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGIDIGK----------------KKAGDEESKFSKRHAGKQEKRCQTRLPLDEGIKELFQSGRLYASIASRPGQSGRADGYLLEGKELEFYAKAMQKKKKAGKS 204          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_DICDI (40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.691e-49
Identity = 106/193 (54.92%), Postives = 126/193 (65.28%), Query Frame = -3
Query:  215 YELGRQPANTKLSSN---KTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK 784
            YELGRQ A TK+ S    K VR IRVRGG+ K+RALRLDTGN+SW +E +TRK RIL+VVYNA++N+LVRT TLVK +IVQ+DA P+KQWY  HYGV +G+                          KS  +  KL  R K R LD  IE Q G GR  A I SRPGQ G+ DGYILE KELEFY ++LQ+KK
Sbjct:   27 YELGRQAAKTKICSQGEEKRVRSIRVRGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRTNTLVKGSIVQIDATPYKQWYETHYGVVVGK-----------KKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIGEGRFFARITSRPGQVGKCDGYILEAKELEFYQRRLQKKK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_CAEEL (40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.691e-49
Identity = 100/192 (52.08%), Postives = 132/192 (68.75%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            +ELGR  ANTK+ +++ VR +R RGGN K+RALRLD+GN+SW SE  TRKTRI+D +YNA+NNELVRT+TLVK AI+ VDAAPF+QWY  HY + + R                          +S+H  +K  +RQK   +D  + EQF +GRLLA I+S PGQ G+A+GYILEGKEL+FY++K++ KK K
Sbjct:   27 FELGRPAANTKIGAHR-VRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLAR---------KKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.296e-49
Identity = 101/191 (52.88%), Postives = 130/191 (68.06%), Query Frame = -3
Query:  215 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPH-IEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK 784
            YELGR  +NTKL S K VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYG+++G+                               S   +  +K   L P  + +QF SGRLLACI+SRPGQCGR DGY+LEG+EL FY +++ +KK
Sbjct:   27 YELGRPSSNTKLGS-KLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGKS------------------------------SEDPQASEKVAALVPRTLLDQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRMDKKK 186          
The following BLAST results are available for this feature:
BLAST of CV884283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_HUMAN2.918e-5454.1740S ribosomal protein S8 OS=Homo sapiens GN=RPS8 P... [more]
RS8_BOVIN2.918e-5454.1740S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=... [more]
RS8_XENLA4.977e-5455.2140S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_APIME6.500e-5455.7340S ribosomal protein S8 OS=Apis mellifera GN=RpS8... [more]
RS8_SPOFR3.226e-5356.2540S ribosomal protein S8 OS=Spodoptera frugiperda ... [more]
RS8_DROME4.658e-5255.7940S ribosomal protein S8 OS=Drosophila melanogaste... [more]
RS8_GRIJA1.957e-5055.3840S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8_DICDI3.691e-4954.9240S ribosomal protein S8 OS=Dictyostelium discoide... [more]
RS8_CAEEL3.691e-4952.0840S ribosomal protein S8 OS=Caenorhabditis elegans... [more]
RS8_THEPA6.296e-4952.8840S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002D07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884283 ID=CV884283; Name=CV884283; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTAAGCGGAAGAATTCTAACACAGGAACTGGTAATATTCAAAAACA
AAATATAACAATAACACAAGTGAGAAATACAAGTTCGACTGCTGATATCA
TCTCGACTCTCGAAGTTTTAACTTAAGACTAAAAACAAGAACACAAGACA
AAACTAGAAATTCCAGTACGGAGTTTCAATAAACAAAAATTTAAGCAGCA
CCAGCACTCTTGCCCTTCTTCCTCTGTAACTTCTTCATGTAGAATTCCAG
TTCTTTACCCTCCAAGATGTATCCATCAGCACGTCCACACTGGCCAGGCC
GTGATGCGATACAAGCTAACAAACGACCACTACCAAACTGCTCCTCAATA
TGTGGGTCAAGTGTGCGATCTTTTTGACGCTTCTCAAGCTTTCTCGAGAC
ATGGTTGCTCTTCTTTGCCTCCTCAGTGGCGGGAGCCTCTCCTTCCTCTC
CTTCTTTCTTGGTTGTGGCAGCAGCTGCAGCCTTCTTCTTGCGACCAATG
TCAACACCATAATGCTGGAGATACCACTGCTTGAATGGTGCTGCATCAAC
CTGAACAATGGCACTCTTCACCAAAGTTTGAGTACGGACCAGCTCATTAT
TGGAGGCATTGTATACCACATCCAGAATTCTGGTCTTACGAGTCACTGCT
TCACTTCCCCAGGAGTAGTTTCCTGTGTCAAGCCTCAAAGCACGCCATTT
CACATTACCTCCACGAACCCTAATCCTCCTCACTGTCTTGTTGCTTGATA
GCTTAGTATTTGCAGGTTGCCTTCCAAGCTCATACTTTCTCTTCTTCCTC
CAAGCCTTCTTCTTGCCCCCAGTAGCACGCCTCTTGTGCATGGAATCACC
CT
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