CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Mus musculus GN=Ndufs2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.063e-36
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTA+EAPKGEFGV+LVS+GS+RPYRCKI+APGFAHL GLD MSK HMLADVV IIGTQDIVFGE+DR
Sbjct:  379 IHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis GN=NAD7 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.051e-36
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG  VPA  TYTA EAPKGEFGV+LVS GS+RPYRCKI+APGF+HLQGL+FM+  HMLADVVTIIGTQDIVFGEVDR
Sbjct:  314 IHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSKGSSRPYRCKIKAPGFSHLQGLNFMACSHMLADVVTIIGTQDIVFGEVDR 398          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Pongo pygmaeus GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.544e-35
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTA+EAPKGEFGV+LVS+GS+RPYRCKI+APGFAHL  LD MSK HMLADVV IIGTQDIVFGEVDR
Sbjct:  379 IHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLASLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICM5 (NADH-quinone oxidoreductase subunit D OS=Rickettsia massiliae (strain Mtu5) GN=nuoD PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.439e-35
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA  TY AVEAPKGEFGV+L S G NRPYRC+I+APGFAHLQGLDFMSK H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICCN (NADH-quinone oxidoreductase subunit D OS=Rickettsia conorii GN=nuoD PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.439e-35
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA  TY AVEAPKGEFGV+L S G NRPYRC+I+APGFAHLQGLDFMSK H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICRS (NADH-quinone oxidoreductase subunit D OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.001e-34
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA  TY AVEAPKGEFGV+L S G NRPYRC+I+APGFAHLQGLDFMS+ H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICRO (NADH-quinone oxidoreductase subunit D OS=Rickettsia rickettsii (strain Iowa) GN=nuoD PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.001e-34
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA  TY AVEAPKGEFGV+L S G NRPYRC+I+APGFAHLQGLDFMS+ H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICFE (NADH-quinone oxidoreductase subunit D OS=Rickettsia felis GN=nuoD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.001e-34
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA  TY AVEAPKGEFGV+L S G NRPYRC+I+APGFAHLQGLDF+SK H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFISKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICBR (NADH-quinone oxidoreductase subunit D OS=Rickettsia bellii (strain RML369-C) GN=nuoD PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.707e-34
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+L S G NRPYRC+I+APGFAHLQGLDFMSK H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYDVPAGEIYKAVEAPKGEFGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICB8 (NADH-quinone oxidoreductase subunit D OS=Rickettsia bellii (strain OSU 85-389) GN=nuoD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.707e-34
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+L S G NRPYRC+I+APGFAHLQGLDFMSK H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYDVPAGEIYKAVEAPKGEFGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NDUS2_MOUSE4.063e-3681.18NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_PYLLI9.051e-3682.35NADH-ubiquinone oxidoreductase 49 kDa subunit OS=P... [more]
NDUS2_PONPY1.544e-3581.18NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOD_RICM53.439e-3577.65NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICCN3.439e-3577.65NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICRS1.001e-3476.47NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICRO1.001e-3476.47NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICFE1.001e-3476.47NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICBR1.707e-3476.47NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RICB81.707e-3476.47NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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