CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_CAFRO (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Cafeteria roenbergensis GN=NAD7 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.229e-34
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+ +TEGF VPA  TY AVEAPKGE GVFL+S+GSN+P+RCKI+APGF HLQ L  M+KHHM+ADVVTIIGTQDIVFGEVDR
Sbjct:  314 IHHFKYFTEGFKVPAGQTYAAVEAPKGEMGVFLISDGSNQPFRCKIKAPGFFHLQNLPEMTKHHMIADVVTIIGTQDIVFGEVDR 398          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDUS2_ACACA (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Acanthamoeba castellanii GN=NAD7 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.229e-34
Identity = 65/85 (76.47%), Postives = 77/85 (90.59%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EGF+VP + TY  VEAPKGEFGV++VS+GSN+PYRCKI+APGF HLQ L+ MSK HM+ADVVTIIGTQDIVFGE+DR
Sbjct:  317 IHHFKLYSEGFNVPENETYACVEAPKGEFGVYVVSDGSNKPYRCKIKAPGFLHLQSLNSMSKGHMIADVVTIIGTQDIVFGEIDR 401          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOCS (NADH-quinone oxidoreductase subunit D OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.912e-34
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA  TYTAVE+PKGEFGV+LVS+G+NRPYRCKIR  GF+HLQ +DFMSK HMLAD V IIG+ DIVFGE+DR
Sbjct:  314 IHHFKLYTEGYHVPAGETYTAVESPKGEFGVYLVSDGTNRPYRCKIRPTGFSHLQAMDFMSKGHMLADTVAIIGSMDIVFGEIDR 398          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOPB (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisB18) GN=nuoD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.486e-34
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGVFLVS+GSN+PY+CKIRAPGFAHLQ +DF+S+ H+LADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGFRVPAGEVYVAVEAPKGEFGVFLVSDGSNKPYKCKIRAPGFAHLQAMDFISRGHLLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICPR (NADH-quinone oxidoreductase subunit D OS=Rickettsia prowazekii GN=nuoD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.106e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP   TY AVEAPKGEFGV+L S G N+PYRC+I+APGFAHLQGL+FMSK H++ADV+TII T DIVFGE+DR
Sbjct:  305 IHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLIADVITIIATLDIVFGEIDR 389          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOPT (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain TIE-1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.106e-33
Identity = 64/85 (75.29%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LVS+GSN+PY+CKIRAPGFAHLQ +DF+S+ H+LADV  I+G+ DIVFGEVDR
Sbjct:  318 IHHFKLYTEGFHVPAGEVYVAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLSRGHLLADVSAILGSLDIVFGEVDR 402          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOPA (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris GN=nuoD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.106e-33
Identity = 64/85 (75.29%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LVS+GSN+PY+CKIRAPGFAHLQ +DF+S+ H+LADV  I+G+ DIVFGEVDR
Sbjct:  318 IHHFKLYTEGFHVPAGEVYVAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLSRGHLLADVSAILGSLDIVFGEVDR 402          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_OCHA4 (NADH-quinone oxidoreductase subunit D OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=nuoD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.106e-33
Identity = 73/124 (58.87%), Postives = 86/124 (69.35%), Query Frame = -3
Query:   71 ITLGLERDGTGYIIGGADASFFL*IAGQMTTGSSVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 442
            + LG ER G    +  AD        G+M          IHHF+LYTEG+ VPA   Y AVEAPKGEFGVFLVS+GSN+PYRCK+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  279 LLLGKERVGP---VSNADNKIVPPKRGEMKRSMEAL---IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD1_RHIEC (NADH-quinone oxidoreductase subunit D 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nuoD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.445e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   YTAVEAPKGEFGV+LVS+GSN+PYRCKIRAPG+AHLQ +DFM + H LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYTAVEAPKGEFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICCK (NADH-quinone oxidoreductase subunit D OS=Rickettsia canadensis (strain McKiel) GN=nuoD PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA  TY AVEAPKGEFGV+L S G+N+PYRC+I+ PGFAHLQGL+FMSK H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTEGYEVPAGETYKAVEAPKGEFGVYLYSIGNNQPYRCRIKTPGFAHLQGLNFMSKGHLMADVITIIATLDIVFGEIDR 391          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NDUS2_CAFRO2.229e-3477.65NADH-ubiquinone oxidoreductase 49 kDa subunit OS=C... [more]
NDUS2_ACACA2.229e-3476.47NADH-ubiquinone oxidoreductase 49 kDa subunit OS=A... [more]
NUOD_RHOCS2.912e-3476.47NADH-quinone oxidoreductase subunit D OS=Rhodospir... [more]
NUOD_RHOPB6.486e-3476.47NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_RICPR1.106e-3374.12NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_RHOPT1.106e-3375.29NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_RHOPA1.106e-3375.29NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_OCHA41.106e-3358.87NADH-quinone oxidoreductase subunit D OS=Ochrobact... [more]
NUOD1_RHIEC1.445e-3374.12NADH-quinone oxidoreductase subunit D 1 OS=Rhizobi... [more]
NUOD_RICCK1.887e-3374.12NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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