CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NEIMF (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=nuoD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG  VP   TYTAVE PKGEFGV+++S+G+N+PYR KIRAPGFAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct:  334 IHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NEIMB (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup B GN=nuoD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG  VP   TYTAVE PKGEFGV+++S+G+N+PYR KIRAPGFAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct:  334 IHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NEIMA (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup A GN=nuoD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG  VP   TYTAVE PKGEFGV+++S+G+N+PYR KIRAPGFAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct:  334 IHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NEIM0 (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup C (strain 053442) GN=nuoD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG  VP   TYTAVE PKGEFGV+++S+G+N+PYR KIRAPGFAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct:  334 IHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NEIG2 (NADH-quinone oxidoreductase subunit D OS=Neisseria gonorrhoeae (strain NCCP11945) GN=nuoD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG  VP   TYTAVE PKGEFGV+++S+G+N+PYR KIRAPGFAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct:  334 IHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NEIG1 (NADH-quinone oxidoreductase subunit D OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nuoD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG  VP   TYTAVE PKGEFGV+++S+G+N+PYR KIRAPGFAHLQG+D M+K HMLADVV IIGTQDIVFGEVDR
Sbjct:  334 IHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_XANP2 (NADH-quinone oxidoreductase subunit D OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.465e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LVS+G+N+PYRCKIRAPGFAHLQ +DF+ + HMLADV  ++G+ DIVFGEVDR
Sbjct:  318 IHHFKLYTEGFHVPAGDVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDFLCRGHMLADVSAVLGSLDIVFGEVDR 402          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_WOLTR (NADH-quinone oxidoreductase subunit D OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.465e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EG+ VP    Y AVEAPKGEFGV++VS+G+NRPYRC+IRAPGFAHLQ LDFM+K HMLADV  IIG+ DIVFGE+DR
Sbjct:  306 IHHFKLYSEGYHVPEGEAYAAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICTY (NADH-quinone oxidoreductase subunit D OS=Rickettsia typhi GN=nuoD PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.465e-33
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP   TY AVEAPKGEFGV+L S G N+PYRC+I+APGFAHLQGL+FMSK H+++DV+TII T DIVFGE+DR
Sbjct:  305 IHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLISDVITIIATLDIVFGEIDR 389          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_EHRRW (NADH-quinone oxidoreductase subunit D OS=Ehrlichia ruminantium (strain Welgevonden) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.465e-33
Identity = 62/85 (72.94%), Postives = 76/85 (89.41%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EG+SVPA  TY AVEAPKGEFGV++VS+G+N+PYRC+IRAPGFAHLQ +D M+K HMLAD+  IIG+ DIVFGE+DR
Sbjct:  309 IHHFKLYSEGYSVPAGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOD_NEIMF1.887e-3376.47NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIMB1.887e-3376.47NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIMA1.887e-3376.47NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIM01.887e-3376.47NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIG21.887e-3376.47NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIG11.887e-3376.47NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_XANP22.465e-3374.12NADH-quinone oxidoreductase subunit D OS=Xanthobac... [more]
NUOD_WOLTR2.465e-3374.12NADH-quinone oxidoreductase subunit D OS=Wolbachia... [more]
NUOD_RICTY2.465e-3372.94NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]
NUOD_EHRRW2.465e-3372.94NADH-quinone oxidoreductase subunit D OS=Ehrlichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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