CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD2_NITHX (NADH-quinone oxidoreductase subunit D 2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=nuoD2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.465e-33
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGVFLVS+GSN+PY+CKIRAPGFAHLQ +DF+ + H+LADV  I+G+ DIVFGEVDR
Sbjct:  318 IHHFKLYTEGFRVPAGEVYAAVEAPKGEFGVFLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_WOLPP (NADH-quinone oxidoreductase subunit D OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EG+ VP    Y AVEAPKGEFGV++VS+G+NRPYRC+IRAPGFAHLQ LDFM+K HMLAD+  IIG+ DIVFGE+DR
Sbjct:  306 IHHFKLYSEGYHVPEGEAYVAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAIIGSLDIVFGEIDR 390          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOP5 (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisA53) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGVFLVS+G+N+PY+CKIRAPGFAHLQ +DF+++ H+LADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGFRVPAGEVYVAVEAPKGEFGVFLVSDGTNKPYKCKIRAPGFAHLQAMDFVTRGHLLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_METS4 (NADH-quinone oxidoreductase subunit D OS=Methylobacterium sp. (strain 4-46) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LV++G+N+PYRCKIRAPGFAHLQ +D+M + HMLADV  I+GT DIVFGEVDR
Sbjct:  312 IHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKIRAPGFAHLQAMDWMCRGHMLADVSCILGTLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUSU (NADH-quinone oxidoreductase subunit D OS=Brucella suis GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYRCK+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUSI (NADH-quinone oxidoreductase subunit D OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYRCK+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUO2 (NADH-quinone oxidoreductase subunit D OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYRCK+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUME (NADH-quinone oxidoreductase subunit D OS=Brucella melitensis GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYRCK+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUC2 (NADH-quinone oxidoreductase subunit D OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=nuoD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.219e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYRCK+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RICAH (NADH-quinone oxidoreductase subunit D OS=Rickettsia akari (strain Hartford) GN=nuoD PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 5.491e-33
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYT G+ VPA  TY AVEAPKGEFGV+L S G N PYRC+I++PGFAHLQGLDFMSK H++ADV+TII T DIVFGE+DR
Sbjct:  307 IHHFKLYTAGYDVPAGETYKAVEAPKGEFGVYLYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOD2_NITHX2.465e-3375.29NADH-quinone oxidoreductase subunit D 2 OS=Nitroba... [more]
NUOD_WOLPP3.219e-3372.94NADH-quinone oxidoreductase subunit D OS=Wolbachia... [more]
NUOD_RHOP53.219e-3374.12NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_METS43.219e-3375.29NADH-quinone oxidoreductase subunit D OS=Methyloba... [more]
NUOD_BRUSU3.219e-3374.12NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_BRUSI3.219e-3374.12NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_BRUO23.219e-3374.12NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_BRUME3.219e-3374.12NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_BRUC23.219e-3374.12NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_RICAH5.491e-3374.12NADH-quinone oxidoreductase subunit D OS=Rickettsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
back to top