CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOCD_AZOVD (NADH-quinone oxidoreductase subunit C/D OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=nuoC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = -3
Query:   71 TSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 331
            T I HF   + G  +PA+ ++  +EA KG    +L S+GS   YR +IR P +AHLQ +  + +  M+AD++  +G+ D V  +VDR
Sbjct:  507 TLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPSVIRGSMVADLIAYLGSIDFVMADVDR 593          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDHH_SYNPW (NAD(P)H-quinone oxidoreductase subunit H OS=Synechococcus sp. (strain WH7803) GN=ndhH PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = -3
Query:   71 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 295
            F +P    YT +E+ KGE G+F+  N    P+R KIRA    +LQ L  + K H +AD++ I+G+ D++ G VDR
Sbjct:  320 FKIPNGELYTRLESGKGEIGIFIQGNNDVTPWRFKIRAADSNNLQILPHILKGHKVADIMAILGSIDVIMGSVDR 394          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDHH_PAUCH (NAD(P)H-quinone oxidoreductase subunit H, organellar chromatophore OS=Paulinella chromatophora GN=ndhH PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = -3
Query:   71 PASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 286
            P    Y  VE+ KGE GVF++SNG   P+R KIRA  F +LQ L  +     +ADV+ I+G+ D++ G VDR
Sbjct:  335 PEGELYCRVESGKGELGVFIISNGEANPWRWKIRAADFNNLQILPHILTGAKVADVMAILGSIDVIMGSVDR 406          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_DESRM (NADH-quinone oxidoreductase subunit D OS=Desulfotomaculum reducens (strain MI-1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = -3
Query:   74 PASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVD 286
            P    Y  +E+ KG  G ++VS+GS +PYR   R P F +L  L+ M +   +ADV+ I+G+ DIV GEVD
Sbjct:  295 PVGEAYAEIESSKGIMGTYVVSDGSTKPYRVHFRRPSFVNLGYLNEMLRGWKIADVIAILGSIDIVLGEVD 365          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOCD_PSEF5 (NADH-quinone oxidoreductase subunit C/D OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=nuoC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = -3
Query:   71 TSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 331
            T I HF   + G  +PA+ ++  +EA KG    +L S+G    YR +IR P FAHLQ +  + +  M+AD++  +G+ D V  +VDR
Sbjct:  507 TLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFAHLQQIPSVIRGSMVADLIAYLGSIDFVMADVDR 593          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOCD_ARCB4 (NADH-quinone oxidoreductase subunit C/D OS=Arcobacter butzleri (strain RM4018) GN=nuoC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            ++ F+L  EG  VP    Y+  EA  GE G F+VS+GS RPY+ K R P F  L     + +  MLAD V  + + + + GE DR
Sbjct:  460 MNQFKLTFEGIQVPKGEYYSFSEAANGELGFFIVSDGSGRPYKVKCRPPCFYSLAAYSKIVEGTMLADAVVTMASMNFIAGEFDR 544          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NDHH_THEEB (NAD(P)H-quinone oxidoreductase subunit H OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhH PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = -3
Query:   71 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 295
            F +P    Y  VE+ KGE G++L+ + +  P+R KIR P F +LQ L  + K   +AD+V I+G+ D++ G VDR
Sbjct:  320 FKIPKGEHYVRVESGKGELGIYLIGDDNVFPWRWKIRPPDFNNLQVLPQLLKGMKVADIVAILGSIDVIMGSVDR 394          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOCD_AZOVD5.908e-1137.93NADH-quinone oxidoreductase subunit C/D OS=Azotoba... [more]
NDHH_SYNPW5.908e-1141.33NAD(P)H-quinone oxidoreductase subunit H OS=Synech... [more]
NDHH_PAUCH5.908e-1145.83NAD(P)H-quinone oxidoreductase subunit H, organell... [more]
NUOD_DESRM7.716e-1143.66NADH-quinone oxidoreductase subunit D OS=Desulfoto... [more]
NUOCD_PSEF57.716e-1137.93NADH-quinone oxidoreductase subunit C/D OS=Pseudom... [more]
NUOCD_ARCB47.716e-1140.00NADH-quinone oxidoreductase subunit C/D OS=Arcobac... [more]
NDHH_THEEB7.716e-1141.33NAD(P)H-quinone oxidoreductase subunit H OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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