CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHILW (NADH-quinone oxidoreductase subunit D OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=nuoD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.491e-33
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYRCKIRAPG+AHLQ +DFM + H LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_ACICJ (NADH-quinone oxidoreductase subunit D OS=Acidiphilium cryptum (strain JF-5) GN=nuoD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.491e-33
Identity = 62/85 (72.94%), Postives = 76/85 (89.41%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA +TYTAVEAPKGEFGV+LV++GSNRPYRCKIRA GF+HLQ ++ MSK H+LAD + ++G+ DIVFGEVDR
Sbjct:  322 IHHFKLYTEGYHVPAGTTYTAVEAPKGEFGVYLVADGSNRPYRCKIRATGFSHLQAMNLMSKGHLLADAIAVLGSIDIVFGEVDR 406          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD1_RHIE6 (NADH-quinone oxidoreductase subunit D 1 OS=Rhizobium etli (strain CIAT 652) GN=nuoD1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.491e-33
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYRCKIRAPG+AHLQ +DFM + H LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_WOLPM (NADH-quinone oxidoreductase subunit D OS=Wolbachia pipientis wMel GN=nuoD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.172e-33
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EG+ VP    Y  VEAPKGEFGV++VS+G+NRPYRC+IRAPGFAHLQ LDFM+K HMLADV  IIG+ DIVFGE+DR
Sbjct:  306 IHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NITWN (NADH-quinone oxidoreductase subunit D OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=nuoD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.172e-33
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LVS+GSN+PY+CKIRAPGFAHLQ +DF+ + H+LADV  I+G+ DIVFGEVDR
Sbjct:  318 IHHFKLYTEGFHVPAGEIYAAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_JANMA (NADH-quinone oxidoreductase subunit D OS=Janthinobacterium sp. (strain Marseille) GN=nuoD PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.366e-33
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP    Y AVE PKGEFGV+L+S+G+N+PYR KIRAPGF HLQGLD M+K HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPTGEAYAAVEHPKGEFGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_HERAR (NADH-quinone oxidoreductase subunit D OS=Herminiimonas arsenicoxydans GN=nuoD PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.366e-33
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP    Y AVE PKGEFGV+L+S+G+N+PYR KIRAPGF HLQGLD M+K HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPVGEAYAAVEHPKGEFGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_EHRCR (NADH-quinone oxidoreductase subunit D OS=Ehrlichia chaffeensis (strain Arkansas) GN=nuoD PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.366e-33
Identity = 61/85 (71.76%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EG+SVP   TY AVEAPKGEFGV++VS+G+N+PYRC+IRAPGFAHLQ +D M+K HMLAD+  IIG+ DIVFGE+DR
Sbjct:  309 IHHFKLYSEGYSVPIGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHILO (NADH-quinone oxidoreductase subunit D OS=Rhizobium loti GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.223e-32
Identity = 60/85 (70.59%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+G+N+PYRCK+RAPGFAHLQ +DF+ + H+LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYRVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVTAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHIL3 (NADH-quinone oxidoreductase subunit D OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.223e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+G+N+PYRCKIRAPG+AHLQ +DFM + H LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOD_RHILW5.491e-3372.94NADH-quinone oxidoreductase subunit D OS=Rhizobium... [more]
NUOD_ACICJ5.491e-3372.94NADH-quinone oxidoreductase subunit D OS=Acidiphil... [more]
NUOD1_RHIE65.491e-3372.94NADH-quinone oxidoreductase subunit D 1 OS=Rhizobi... [more]
NUOD_WOLPM7.172e-3372.94NADH-quinone oxidoreductase subunit D OS=Wolbachia... [more]
NUOD_NITWN7.172e-3374.12NADH-quinone oxidoreductase subunit D OS=Nitrobact... [more]
NUOD_JANMA9.366e-3374.12NADH-quinone oxidoreductase subunit D OS=Janthinob... [more]
NUOD_HERAR9.366e-3374.12NADH-quinone oxidoreductase subunit D OS=Herminiim... [more]
NUOD_EHRCR9.366e-3371.76NADH-quinone oxidoreductase subunit D OS=Ehrlichia... [more]
NUOD_RHILO1.223e-3270.59NADH-quinone oxidoreductase subunit D OS=Rhizobium... [more]
NUOD_RHIL31.223e-3271.76NADH-quinone oxidoreductase subunit D OS=Rhizobium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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