CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_MESSB (NADH-quinone oxidoreductase subunit D OS=Mesorhizobium sp. (strain BNC1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.223e-32
Identity = 60/85 (70.59%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LV++G+N+PYRCK+RAPGFAHLQ +DFM + H+LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRCKLRAPGFAHLQAMDFMCRGHLLADVTAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_EHRRG (NADH-quinone oxidoreductase subunit D OS=Ehrlichia ruminantium (strain Gardel) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.223e-32
Identity = 61/85 (71.76%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EG+ VPA  TY AVEAPKGEFGV++VS+G+N+PYRC+IRAPGFAHLQ +D M+K HMLAD+  IIG+ DIVFGE+DR
Sbjct:  309 IHHFKLYSEGYIVPAGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOP2 (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain HaA2) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LVS+G+N+PY+CK+RAPGFAHLQ +DF+ + H+LADV  I+G+ DIVFGEVDR
Sbjct:  317 IHHFKLYTEGFRVPAGEVYVAVEAPKGEFGVYLVSDGTNKPYKCKVRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 401          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_ORITI (NADH-quinone oxidoreductase subunit D OS=Orientia tsutsugamushi (strain Ikeda) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            I+HF+LY+EG++VPA   Y AVEAPKGEFGV+L S+G+NRPYRC+I+APGFAHLQGLDFM++ H L+D++TII T DIVFGE+DR
Sbjct:  312 INHFKLYSEGYNVPAGEVYAAVEAPKGEFGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_ORITB (NADH-quinone oxidoreductase subunit D OS=Orientia tsutsugamushi (strain Boryong) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            I+HF+LY+EG++VPA   Y AVEAPKGEFGV+L S+G+NRPYRC+I+APGFAHLQGLDFM++ H L+D++TII T DIVFGE+DR
Sbjct:  312 INHFKLYSEGYNVPAGEVYAAVEAPKGEFGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_METRJ (NADH-quinone oxidoreductase subunit D OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VP    Y AVEAPKGEFGV+LVS+G+N+PYRCKIRAPGFAHLQ +D+M + H+LADV  ++GT DIVFGEVDR
Sbjct:  312 IHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_METPB (NADH-quinone oxidoreductase subunit D OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VP    Y AVEAPKGEFGV+LVS+G+N+PYRCKIRAPGFAHLQ +D+M + H+LADV  ++GT DIVFGEVDR
Sbjct:  312 IHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_METEP (NADH-quinone oxidoreductase subunit D OS=Methylobacterium extorquens (strain PA1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VP    Y AVEAPKGEFGV+LVS+G+N+PYRCKIRAPGFAHLQ +D+M + H+LADV  ++GT DIVFGEVDR
Sbjct:  312 IHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_GRABC (NADH-quinone oxidoreductase subunit D OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VP  +TYTAVE+PKGEFGV+LVS+GSNRPYRCKIR  GFAHLQ +D M+  HMLAD V IIG+ D+VFGEVDR
Sbjct:  316 IHHFKLYTEGYHVPEGATYTAVESPKGEFGVYLVSDGSNRPYRCKIRPTGFAHLQAIDVMAHRHMLADAVVIIGSLDLVFGEVDR 400          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BORA1 (NADH-quinone oxidoreductase subunit D OS=Bordetella avium (strain 197N) GN=nuoD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.598e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP    Y AVE PKGEFG++LVS+G+N+PYR KIRAPGFAHLQ LD MS+ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  334 IHHFKLFTEGFHVPPGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOD_MESSB1.223e-3270.59NADH-quinone oxidoreductase subunit D OS=Mesorhizo... [more]
NUOD_EHRRG1.223e-3271.76NADH-quinone oxidoreductase subunit D OS=Ehrlichia... [more]
NUOD_RHOP21.598e-3271.76NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_ORITI1.598e-3270.59NADH-quinone oxidoreductase subunit D OS=Orientia ... [more]
NUOD_ORITB1.598e-3270.59NADH-quinone oxidoreductase subunit D OS=Orientia ... [more]
NUOD_METRJ1.598e-3272.94NADH-quinone oxidoreductase subunit D OS=Methyloba... [more]
NUOD_METPB1.598e-3272.94NADH-quinone oxidoreductase subunit D OS=Methyloba... [more]
NUOD_METEP1.598e-3272.94NADH-quinone oxidoreductase subunit D OS=Methyloba... [more]
NUOD_GRABC1.598e-3274.12NADH-quinone oxidoreductase subunit D OS=Granuliba... [more]
NUOD_BORA11.598e-3274.12NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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