CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_THICR (NADH-quinone oxidoreductase subunit D OS=Thiomicrospira crunogena (strain XCL-2) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.087e-32
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG+SVP   +YTAVE PKGEFG+++VS+G+N+PYR K+RAPGFAHL  LD M+K HM+ADVV IIGTQDIVFGEVDR
Sbjct:  333 IHHFKLFTEGYSVPEGESYTAVEHPKGEFGIYMVSDGANKPYRLKVRAPGFAHLASLDEMAKGHMIADVVAIIGTQDIVFGEVDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOPS (NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris (strain BisB5) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.087e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VP    Y AVEAPKGEFGV+LVS+GSN+PY+CKIRAPGFAHLQ +DF+ + H+LADV  I+G+ DIVFGEVDR
Sbjct:  332 IHHFKLYTEGFRVPEGEVYVAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 416          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_EHRCJ (NADH-quinone oxidoreductase subunit D OS=Ehrlichia canis (strain Jake) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.087e-32
Identity = 60/85 (70.59%), Postives = 75/85 (88.24%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LY+EG+SVP   TY AVEAPKGEFGV++VS+G+N+PYRC+IRAPGFAHLQ +D ++K HMLAD+  IIG+ DIVFGE+DR
Sbjct:  309 IHHFKLYSEGYSVPVGETYMAVEAPKGEFGVYIVSDGTNKPYRCRIRAPGFAHLQAIDIIAKGHMLADLTAIIGSLDIVFGEIDR 393          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_AZOC5 (NADH-quinone oxidoreductase subunit D OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.725e-32
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VP    Y AVEAPKGEFGV+LV +G+N+PYRCKIRAPGFAHLQ +DF+ + HMLADV  ++G+ DIVFGEVDR
Sbjct:  318 IHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVGDGTNKPYRCKIRAPGFAHLQSMDFLCRGHMLADVSAVLGSLDIVFGEVDR 402          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_AGRT5 (NADH-quinone oxidoreductase subunit D OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.725e-32
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV++V++GSN+PYRCKIRAPG+AHLQ +DF+ K H LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOS4 (NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.559e-32
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = -3
Query:   71 GQMTTGSSVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 364
            G+M T        IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LV++G+NRPYR KIRAPGF HLQ +D+++K H+LADV  IIGT D+VFGE+DR
Sbjct:  310 GEMKTSMEAL---IHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 404          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOS1 (NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.559e-32
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = -3
Query:   71 GQMTTGSSVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 364
            G+M T        IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LV++G+NRPYR KIRAPGF HLQ +D+++K H+LADV  IIGT D+VFGE+DR
Sbjct:  308 GEMKTSMEAL---IHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHORT (NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.559e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TYTAVEA  GEFGV+LVS+G+NRPYRCKIR+PG+ HLQGLD MS+ HMLADVV  IG+ D+VFGE+DR
Sbjct:  308 IHHFKLFTEGFKVPEGETYTAVEAATGEFGVYLVSDGTNRPYRCKIRSPGYVHLQGLDLMSRGHMLADVVANIGSIDVVFGEIDR 392          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRASB (NADH-quinone oxidoreductase subunit D OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=nuoD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.559e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG  VPA   Y AVEAPKGEFGV+LVS+GSN+PY+CKIRAPGFAHLQ +DF+ + H+LADV  I+G+ DIVFGEVDR
Sbjct:  314 IHHFKLYTEGVHVPAGEIYAAVEAPKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_RHOS5 (NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=nuoD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.648e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LV++G+NRPYR KIRAPGF HLQ +D+++K H+LADV  IIGT D+VFGE+DR
Sbjct:  318 IHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOD_THICR2.087e-3272.94NADH-quinone oxidoreductase subunit D OS=Thiomicro... [more]
NUOD_RHOPS2.087e-3272.94NADH-quinone oxidoreductase subunit D OS=Rhodopseu... [more]
NUOD_EHRCJ2.087e-3270.59NADH-quinone oxidoreductase subunit D OS=Ehrlichia... [more]
NUOD_AZOC52.725e-3271.76NADH-quinone oxidoreductase subunit D OS=Azorhizob... [more]
NUOD_AGRT52.725e-3270.59NADH-quinone oxidoreductase subunit D OS=Agrobacte... [more]
NUOD_RHOS43.559e-3265.31NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]
NUOD_RHOS13.559e-3265.31NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]
NUOD_RHORT3.559e-3272.94NADH-quinone oxidoreductase subunit D OS=Rhodospir... [more]
NUOD_BRASB3.559e-3272.94NADH-quinone oxidoreductase subunit D OS=Bradyrhiz... [more]
NUOD_RHOS54.648e-3271.76NADH-quinone oxidoreductase subunit D OS=Rhodobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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