CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_GLUDA (NADH-quinone oxidoreductase subunit D OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=nuoD PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 4.648e-32
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG+ VP  +TYTAVE+PKGEFGV+LV++GSNRPYRCKIR  GFAHLQ +D MS+ HMLAD V IIG+ D+VFGE+DR
Sbjct:  332 IHHFKLFTEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 416          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD1_SINMW (NADH-quinone oxidoreductase subunit D 1 OS=Sinorhizobium medicae (strain WSM419) GN=nuoD1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.648e-32
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+G+N+PYRCKIRAPG+AHLQ +DF+ + H LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGDVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD1_RHIME (NADH-quinone oxidoreductase subunit D 1 OS=Rhizobium meliloti GN=nuoD1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.648e-32
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+G+N+PYRCKIRAPG+AHLQ +DF+ + H LADV  ++G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_THIDA (NADH-quinone oxidoreductase subunit D OS=Thiobacillus denitrificans (strain ATCC 25259) GN=nuoD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.071e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEG  VPA   Y AVE PKGEFG++LVS+G+N+PYR KIRAPGFAHL+ LD MS+ HM+ADVV IIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGMHVPAGEAYAAVEHPKGEFGIYLVSDGANKPYRMKIRAPGFAHLEALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUAB (NADH-quinone oxidoreductase subunit D OS=Brucella abortus GN=nuoD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.071e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYR K+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRFKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUA2 (NADH-quinone oxidoreductase subunit D OS=Brucella abortus (strain 2308) GN=nuoD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.071e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYR K+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRFKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BRUA1 (NADH-quinone oxidoreductase subunit D OS=Brucella abortus (strain S19) GN=nuoD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.071e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+GSN+PYR K+RAPGFAHLQ +DF+ + HMLADV  I+G+ DIVFGEVDR
Sbjct:  312 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGSNKPYRFKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_NITMU (NADH-quinone oxidoreductase subunit D OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++L+S+G+N PYR KIRAPGFAHL  LD MS+ HM+ADVV IIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPPGETYAAVEHPKGEFGIYLISDGANMPYRMKIRAPGFAHLAALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURPS (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURP6 (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei (strain 668) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOD_GLUDA4.648e-3271.76NADH-quinone oxidoreductase subunit D OS=Gluconace... [more]
NUOD1_SINMW4.648e-3270.59NADH-quinone oxidoreductase subunit D 1 OS=Sinorhi... [more]
NUOD1_RHIME4.648e-3270.59NADH-quinone oxidoreductase subunit D 1 OS=Rhizobi... [more]
NUOD_THIDA6.071e-3272.94NADH-quinone oxidoreductase subunit D OS=Thiobacil... [more]
NUOD_BRUAB6.071e-3272.94NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_BRUA26.071e-3272.94NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_BRUA16.071e-3272.94NADH-quinone oxidoreductase subunit D OS=Brucella ... [more]
NUOD_NITMU7.929e-3272.94NADH-quinone oxidoreductase subunit D OS=Nitrososp... [more]
NUOD_BURPS7.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURP67.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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