CV884235

Overview
NameCV884235
Unique NameCV884235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURP1 (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei (strain 1710b) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURP0 (NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei (strain 1106a) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURMS (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei (strain SAVP1) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURMA (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURM9 (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei (strain NCTC 10229) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_BURM7 (NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei (strain NCTC 10247) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+L+TEGF VP   TY AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_PARL1 (NADH-quinone oxidoreductase subunit D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.036e-31
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEG+ VPA   Y AVEAPKGEFGV+LVS+G N+PY+CKIRAPG+AHLQ +D + K HMLADV  I+G+ DIVFGEVDR
Sbjct:  308 IHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGGNKPYKCKIRAPGYAHLQAMDHLCKGHMLADVSAILGSIDIVFGEVDR 392          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_PARDP (NADH-quinone oxidoreductase subunit D OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoD PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.036e-31
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y AVEAPKGEFGV+LV++G+N+P+R K+RAPGFAHLQ +D+MS+ HMLADV  II T DIVFGEVDR
Sbjct:  328 IHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_SILST (NADH-quinone oxidoreductase subunit D OS=Silicibacter sp. (strain TM1040) GN=nuoD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.352e-31
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VP    Y AVEAPKGEFGV+LV++GSN+PYR K+RAPGF HLQ +D+++K H LADV  IIGT DIVFGE+DR
Sbjct:  319 IHHFKLYTEGFHVPEGEVYAAVEAPKGEFGVYLVADGSNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAIIGTMDIVFGEIDR 403          
BLAST of CV884235 vs. ExPASy Swiss-Prot
Match: NUOD_ROSDO (NADH-quinone oxidoreductase subunit D OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.766e-31
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = -3
Query:   71 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 325
            IHHF+LYTEGF VPA   Y  VEAPKGEFGV+LV++G+N+PYR KIRAPGF HLQ +D MS+ H LADV  IIGT D+VFGE+DR
Sbjct:  323 IHHFKLYTEGFHVPAGEVYACVEAPKGEFGVYLVADGTNKPYRAKIRAPGFLHLQAMDHMSRGHQLADVAAIIGTMDVVFGEIDR 407          
The following BLAST results are available for this feature:
BLAST of CV884235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
NUOD_BURP17.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURP07.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURMS7.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURMA7.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURM97.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURM77.929e-3271.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_PARL11.036e-3171.76NADH-quinone oxidoreductase subunit D OS=Parvibacu... [more]
NUOD_PARDP1.036e-3172.94NADH-quinone oxidoreductase subunit D OS=Paracoccu... [more]
NUOD_SILST1.352e-3170.59NADH-quinone oxidoreductase subunit D OS=Silicibac... [more]
NUOD_ROSDO1.766e-3170.59NADH-quinone oxidoreductase subunit D OS=Roseobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884235 ID=CV884235; Name=CV884235; organism=Citrus sinensis; type=EST; length=468bp
TTTTTTTTTTTTTTTTAAGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGA
TCGAGCAACTAGTAGTCCTATCTATCCACCTCTCCAAACACAATATCTTG
AGTACCTATGATGGTGACCACATCTGCTAGCATGTGATGTTTAGACATAA
AATCGAGTCCTTGTAAATGGGCAAAGCCAGGTGCTCTTATTTTACAACGG
TAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTT
AGGTGCTTCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTT
CTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCT
GTAGTCATTTGGCCGGCTATTTAAAGAAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAAACCTAACGTGATAGTTTCCC
ATCATAAGGCTTTCTCCT
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