CV884234

Overview
NameCV884234
Unique NameCV884234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BURCC (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain MC0-3) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.730e-31
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L+TEGF VP    Y AVE PKGEFG++LVS+G+N+PYR KIRAPGFAHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BURCA (NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.730e-31
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L+TEGF VP    Y AVE PKGEFG++LVS+G+N+PYR KIRAPGFAHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BURA4 (NADH-quinone oxidoreductase subunit D OS=Burkholderia ambifaria (strain MC40-6) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.730e-31
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L+TEGF VP    Y AVE PKGEFG++LVS+G+N+PYR KIRAPGFAHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BRASO (NADH-quinone oxidoreductase subunit D OS=Bradyrhizobium sp. (strain ORS278) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.730e-31
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+LYTEG  VPA   Y AVEAPKGEFGV+LV++G+N+PY+CKIRAPGFAHLQ +DF+ + H+LADV  I+G+ DIVFGEVDR
Sbjct:  314 IHHFKLYTEGVHVPAGEIYAAVEAPKGEFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BURP8 (NADH-quinone oxidoreductase subunit D OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.259e-31
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L+TEGF VP    Y AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGEVDR
Sbjct:  333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BORPE (NADH-quinone oxidoreductase subunit D OS=Bordetella pertussis GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.259e-31
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L++EGF VP    Y AVE PKGEFG++LV++G+N+PYR KIRAPGFAHLQ LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  334 IHHFKLFSEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BORPA (NADH-quinone oxidoreductase subunit D OS=Bordetella parapertussis GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.259e-31
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L++EGF VP    Y AVE PKGEFG++LV++G+N+PYR KIRAPGFAHLQ LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  334 IHHFKLFSEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BORBR (NADH-quinone oxidoreductase subunit D OS=Bordetella bronchiseptica GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.259e-31
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L++EGF VP    Y AVE PKGEFG++LV++G+N+PYR KIRAPGFAHLQ LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  334 IHHFKLFSEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_OLICO (NADH-quinone oxidoreductase subunit D OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.950e-31
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+LYTEG  VP    Y AVEAPKGEFGV+LV++G+N+PY+CKIRAPGFAHLQ +DF+ K H+LADV  I+G+ DIVFGEVDR
Sbjct:  321 IHHFKLYTEGVHVPPGEVYAAVEAPKGEFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAILGSLDIVFGEVDR 405          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NUOD_BURTA (NADH-quinone oxidoreductase subunit D OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nuoD PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.950e-31
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  141 IHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            IHHF+L+TEGF VP    Y AVE PKGEFG++LVS+G+N+PYR KIRAPG+AHL  LD M++ HM+AD VTIIGTQDIVFGE+DR
Sbjct:  333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417          
The following BLAST results are available for this feature:
BLAST of CV884234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
NUOD_BURCC1.730e-3171.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURCA1.730e-3171.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BURA41.730e-3171.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BRASO1.730e-3170.59NADH-quinone oxidoreductase subunit D OS=Bradyrhiz... [more]
NUOD_BURP82.259e-3171.76NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]
NUOD_BORPE2.259e-3170.59NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NUOD_BORPA2.259e-3170.59NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NUOD_BORBR2.259e-3170.59NADH-quinone oxidoreductase subunit D OS=Bordetell... [more]
NUOD_OLICO2.950e-3170.59NADH-quinone oxidoreductase subunit D OS=Oligotrop... [more]
NUOD_BURTA2.950e-3170.59NADH-quinone oxidoreductase subunit D OS=Burkholde... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884234 ID=CV884234; Name=CV884234; organism=Citrus sinensis; type=EST; length=466bp
AGAAAGCCTTATGATGGGAAACTATCACGTTAGGTTTGGAGAGAGATGGG
ACCGGTTATATAATAGGGGGAGCAGATGCAAGCTTTTTTCTTTAAATAGC
CGGCCAAATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATT
TCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCTATACC
GCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGG
AAGCAATCGTCCCTACCGTTGTAAAATAAGAGCACCTGGCTTTGCCCATT
TACAAGGACTCGATTTTATGTCTAAACATCACATGCTAGCAGATGTGGTC
ACCATCATAGGTACTCAAGATATTGTGTTTGGAGAGGTGGATAGATAGGA
CTACTAGTTGCTCGATCAGGACCCTAGCTTTATTGCGAGCCAAAAACTTT
AAAAAAAAAAAAAAAA
back to top