CV884234

Overview
NameCV884234
Unique NameCV884234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_AGRST (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Agrostis stolonifera GN=ndhH-A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G++LV + S  P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  319 FELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_ADICA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Adiantum capillus-veneris GN=ndhH PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  177 VPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            +P    Y  VEAPKGE G+FL+ + S  P+R KIR PGF +LQ +  + +   LAD+VTI+G+ DI+ GEVDR
Sbjct:  322 LPKQEHYVRVEAPKGELGIFLIGDDSVFPWRLKIRPPGFINLQIVPQLIRGMKLADIVTILGSIDIIMGEVDR 394          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_VITVI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Vitis vinifera GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G+FL+ + +  P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  319 FELSKQELYVRVEAPKGELGIFLIGDQNVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_LEMMI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Lemna minor GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G+FL+ + +  P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  321 FELSKQELYVRVEAPKGELGIFLIGDQNVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_HUPLU (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Huperzia lucidula GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +P    Y  VEAPKGE G+FL+ + S  P+R KIR PGF +LQ L  + +   LAD++TI+G+ DI  GEVDR
Sbjct:  319 FKLPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVEGVKLADIMTILGSIDITMGEVDR 393          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_PANGI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Panax ginseng GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G+FL+ +    P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  319 FELSKQELYVRVEAPKGELGIFLIGDRGVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_LACSA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Lactuca sativa GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G+FL+ +    P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  319 FELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_HELAN (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Helianthus annuus GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G+FL+ +    P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  319 FELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_GUIAB (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Guizotia abyssinica GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G+FL+ +    P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  319 FELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393          
BLAST of CV884234 vs. ExPASy Swiss-Prot
Match: NDHH_DIOEL (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Dioscorea elephantipes GN=ndhH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  171 FSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 395
            F +     Y  VEAPKGE G++++ + S  P+R KIR PGF +LQ L  + K   LAD++TI+G+ DI+ GEVDR
Sbjct:  321 FELSKQELYMRVEAPKGELGIYMIGDNSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 395          
The following BLAST results are available for this feature:
BLAST of CV884234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
NDHH_AGRST7.301e-1450.67NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_ADICA7.301e-1450.68NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_VITVI9.535e-1449.33NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_LEMMI9.535e-1449.33NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_HUPLU9.535e-1450.67NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_PANGI1.245e-1349.33NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_LACSA1.245e-1349.33NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_HELAN1.245e-1349.33NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_GUIAB1.245e-1349.33NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_DIOEL1.245e-1348.00NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884234 ID=CV884234; Name=CV884234; organism=Citrus sinensis; type=EST; length=466bp
AGAAAGCCTTATGATGGGAAACTATCACGTTAGGTTTGGAGAGAGATGGG
ACCGGTTATATAATAGGGGGAGCAGATGCAAGCTTTTTTCTTTAAATAGC
CGGCCAAATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATT
TCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCTATACC
GCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGG
AAGCAATCGTCCCTACCGTTGTAAAATAAGAGCACCTGGCTTTGCCCATT
TACAAGGACTCGATTTTATGTCTAAACATCACATGCTAGCAGATGTGGTC
ACCATCATAGGTACTCAAGATATTGTGTTTGGAGAGGTGGATAGATAGGA
CTACTAGTTGCTCGATCAGGACCCTAGCTTTATTGCGAGCCAAAAACTTT
AAAAAAAAAAAAAAAA
back to top