CV884224

Overview
NameCV884224
Unique NameCV884224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:145..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_SCHPO (Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.727e-35
Identity = 71/81 (87.65%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVY+LKRQGRT+Y
Sbjct:   19 HRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_CANGA (Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   19 HRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_ARXAD (Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAIRRLARRGGVKRIS LIYEETR VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   19 HRKILRDNIQGITKPAIRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_YEAST (Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 6.563e-35
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   19 HRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H41_ASHGO (Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 6.563e-35
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYE+ R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   19 HRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEDVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.757e-33
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRK+LRDNIQGITKPAI RLARRGGVKRISGLIYE+ R VLK  LE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   19 HRKILRDNIQGITKPAILRLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 3.982e-32
Identity = 67/78 (85.90%), Postives = 76/78 (97.44%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 351
            HR+V+R+NIQGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   21 HRRVIRENIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_STYLE (Histone H4 OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.976e-31
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query:  124 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            +K L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   21 KKSLKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLY 100          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_OXYNO (Histone H4 OS=Oxytricha nova PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.976e-31
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query:  124 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            +K L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   21 KKSLKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLY 100          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 1
Query:  124 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            +K LR+ I G+TKPAIRRLARRGGVKRIS L+YEETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+TLY
Sbjct:   24 KKALRETILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKTLY 103          
The following BLAST results are available for this feature:
BLAST of CV884224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SCHPO1.727e-3587.65Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE... [more]
H4_CANGA2.946e-3590.12Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3[more]
H4_ARXAD2.946e-3590.12Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 S... [more]
H4_YEAST6.563e-3588.89Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=... [more]
H41_ASHGO6.563e-3588.89Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3[more]
H42_ASHGO2.757e-3386.42Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H41_BLEJA3.982e-3285.90Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H4_STYLE1.976e-3183.75Histone H4 OS=Stylonychia lemnae PE=3 SV=2[more]
H4_OXYNO1.976e-3183.75Histone H4 OS=Oxytricha nova PE=3 SV=2[more]
H4_EUPCR9.807e-3181.25Histone H4 OS=Euplotes crassus PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884224 ID=CV884224; Name=CV884224; organism=Citrus sinensis; type=EST; length=543bp
GACGATTTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAAACTCTTT
TAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGGGATTGG
GAAAGGGAGGCGCCAAGCCTCACCGTAAGGTGCTTCGCGATAACATTCAG
GGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTGGAGTCAA
GCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTGAAGATAT
TCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCACGCCAGG
AGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG
CAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCTGGAATTA
AATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGGGGCTCTT
AGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTTAAATCTT
ATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAAAA
back to top