CV884219 | Citrus Genome Database

Overview


Name	CV884219
Unique Name	CV884219
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	609

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library UCRCS04-UCR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1398	contig	Csv1_Contig1398:2..610.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_PIG (60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_MOUSE (60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_MACFA (60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_HUMAN (60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_CHICK (60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_CERNI (60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_BOVIN (60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.130e-38
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/136 (56.62%), Postives = 99/136 (72.79%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EE++KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KFLK  K  ++++GRYAG+K VIVK  D+G++   +GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

[Close]

BLAST of CV884219 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.803e-37
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = -2

Query:  150 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 554
            M KFLK  K  ++++GRYAG+K VIVK  D+G++   +GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

The following BLAST results are available for this feature:

BLAST of CV884219 vs. ExPASy Swiss-Prot

BLAST of CV884219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RL27_PIG	2.130e-38	57.35	60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 P...	[more]
RL27_MOUSE	2.130e-38	57.35	60S ribosomal protein L27 OS=Mus musculus GN=Rpl27...	[more]
RL27_MACFA	2.130e-38	57.35	60S ribosomal protein L27 OS=Macaca fascicularis G...	[more]
RL27_HUMAN	2.130e-38	57.35	60S ribosomal protein L27 OS=Homo sapiens GN=RPL27...	[more]
RL27_CHICK	2.130e-38	57.35	60S ribosomal protein L27 OS=Gallus gallus GN=RPL2...	[more]
RL27_CERNI	2.130e-38	57.35	60S ribosomal protein L27 OS=Cervus nippon GN=RPL2...	[more]
RL27_BOVIN	2.130e-38	57.35	60S ribosomal protein L27 OS=Bos taurus GN=RPL27 P...	[more]
RL27_CANFA	4.746e-38	56.62	60S ribosomal protein L27 OS=Canis familiaris GN=R...	[more]
RL27B_YEAST	6.198e-38	52.94	60S ribosomal protein L27-B OS=Saccharomyces cerev...	[more]
RL27A_YEAST	1.803e-37	52.94	60S ribosomal protein L27-A OS=Saccharomyces cerev...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_2_002A09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV884219 ID=CV884219; Name=CV884219; organism=Citrus sinensis; type=EST; length=609bp
AAATAGTACCAGATCCAGAAATAAAATTAAGTTCACAAAAAACTACATAA
ATCTCAAAATTCGCACTTTAACAACTAAAGCGTTTTCAATAACACAAAAT
AAAACAAAACAAAAACACAAGTCGTTTTCTTCCTTTGGTTAAAAATCTAA
AACCTGAGCTTAGTAAAGAACCAACGATTCTTGCCAGTCTTAAACCTCTC
CTCGAGGCGCTTCTTGGTCTCCTTGCAAGCGGTCACCTTCTTGTCCTTGC
TCTGGAGGGAATCGGCCGACACGACGTCCTTCAAATCGACGTCGAGAGTG
TAGCGCGTGGGCATCAGGTGCTGGTAGTTGACCAACTTGACGAAGGCCTT
GACGCGTGACTTCTTCGCTGTCTTCTTCGCCGAGTCCTTGCGGATGACCT
TGCCCGGGTACTTCTTTATCCCCGCTACCAAACAGTGCCCGTACGCCCTC
TCGCGGGTCCCGTCGTCGAACGACTTCACGATCACCGCCTTCCGGCCGGC
GTAACGGCCCTGAAGAAGGATCACGGCCTTGTTTGGTTTCAGAAACTTCA
CCATTTCAACTCTCGCTCCTCGCGCACCCGCGGCTCTCTCTGGGTTTTTG
TGTGTTCCT