CV884217

Overview
NameCV884217
Unique NameCV884217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.630e-19
Identity = 63/158 (39.87%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  448 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 912
            E+ S + V RI+ +   +  + P  +FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   53 ERASTQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-LSSVLISIQSL-MTENPYHNEPGFE----QERHSGDSKNYNE 201          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 62/158 (39.24%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  448 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 912
            E+ S + + RI+ +   +  + P  +FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   66 EKASQQCILRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 214          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.797e-18
Identity = 61/158 (38.61%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  448 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 912
            E+ + + + RI+ +   +  + P  +FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   96 ERTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 244          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.797e-18
Identity = 61/158 (38.61%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  448 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 912
            E+ + + + RI+ +   +  + P  +FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   96 ERTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 244          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.797e-18
Identity = 61/158 (38.61%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  448 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 912
            E+ + + + RI+ +   +  + P  +FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   94 ERTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 242          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 47/143 (32.87%), Postives = 80/143 (55.94%), Query Frame = -3
Query:  496 SNKLVKRIQEEWKILENDLPDTIF---VRVYESRMDLLR--AVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPY--FNEPGWES 903
            S+  ++R+QEE K    D P   +   V+  +  MDL +  A I G EGT +  G++   V +P++YP+ PP V + +G    +PN+Y  G +CLS+LN     +++ W P++ T+ Q+++ +Q L+ +  P     EP W S
Sbjct:    2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG--FYHPNVYPSGTICLSILN-----EDQDWRPAI-TLKQIVLGVQDLLDSPNPNSPAQEPAWRS 136          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = -3
Query:  508 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP 888
            +R+  ++K L+ D P  +     E+ + +  AVI G EGTP+ DG F   + F  +YPN PP V + S     +PN+Y  G +CL +L         +W P+   +  +L SIQ+L+  + P  N P
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVS--KMFHPNVYADGSICLDIL-------QNRWSPTYD-VSSILTSIQSLL--DEPNPNSP 121          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = -3
Query:  508 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP 888
            +R+  ++K L+ D P  +     E+ + +  AVI G EGTP+ DG F   + F  +YPN PP V + S     +PN+Y  G +CL +L         +W P+   +  +L SIQ+L+  + P  N P
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVS--KMFHPNVYADGSICLDIL-------QNRWSPTYD-VSSILTSIQSLL--DEPNPNSP 121          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = -3
Query:  460 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP-GWESMDSMEEGERQSN 888
            KR+  ++K L+ D P  I    +++ + L  AVI G + TP+  G F   + F  DYPN PP V + S     +PN+Y  G +CL +L         +W P +  +  +L SIQ+L+ +  P  N P   E+     E +R+ N
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS--RMFHPNIYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLLCDPNP--NSPANSEAARMYSENKREYN 138          
BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = -3
Query:  523 VKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERP 891
            V R++ E ++L  + P  +     ES MD LRA I+G  G+PY  G+F  ++  P  YP  PP + + +     +PN+ + G++CL +L          W P+++ +  VL SIQ L+    P
Sbjct:    4 VSRLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTP--IYHPNIDSAGRICLDILKL---PPKGAWRPALN-ISTVLTSIQLLMSEPNP 120          
The following BLAST results are available for this feature:
BLAST of CV884217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
UBE2Z_XENLA2.630e-1939.87Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_DANRE7.651e-1939.24Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]
UBE2Z_RAT3.797e-1838.61Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE3.797e-1838.61Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN3.797e-1838.61Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBC9_YEAST1.545e-1132.87SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBE2A_MOUSE2.018e-1133.07Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.018e-1133.07Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_WHEAT4.496e-1131.94Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBE2T_XENLA5.872e-1131.71Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884217 ID=CV884217; Name=CV884217; organism=Citrus sinensis; type=EST; length=920bp
GGATATAAAAACTTATGAATGTCTTAATTATATAACACTAAGTGTCAAAT
TTCTAAGTTAGAATTAAGAATGAAATCCTCTGTTCCCAGACTCAGGCTCA
TTCCCAGACTCAGGCTCATTACCAACTCCAGGCACCTCTGCTTTTGCTTG
AGTTAGGAAATTCTCGCAGTCCTTAACTCCGATATATGTAAATTCTTTTA
TGAGAAGATCACAATGCCCAGCTATGGAGGCCTTAAAATCCGGTGAGCAG
CTCTTTTTGCCCTTGTGAATTTTCTGCACACGACCTTTGACCAGAGAACC
CACTTCAGCACCATCCATGTATGCTTTACATGCAGCCAGAATATCATGTG
CACGCTGGTAAAAGTGGCCACTAACAAAATCATTGAAATGCTTTGGAGGT
CTCCTGACAGTGTACAGCATTGTCTTCAGTGACAAGATAAATGCACGCTC
ATTGTACATATTGGACTGTCTTTCACCTTCTTCCATGCTGTCCATACTTT
CCCAACCAGGTTCGTTAAAGTAAGGCCTTTCATTCAAGATCAGTGCTTGT
ATAGAGACCAAAACTTGTAGCATGGTTGACATAGAAGGGATCCACTTCTC
ATTCTTATCACCATCCCAGGTGTTAAGAAGACTAAGGCATACCTTCCCAC
AATTATATAAATTTGGATTGAGTCGAAGGCCACCGGAGTGGTAGTGGACA
TTCGGAGGTACATTAGGATAATCACTAGGGAAGAAAACATCAAAGAAGAA
CAGGCCATCATGGTAGGGAGTTCCCTCTGCCCCTACAATTACGGCCCTCA
AAAGATCCATCCTTGATTCATAAACCCTCACAAAAATTGTATCTGGCAAA
TCATTTTCCAGGATTTTCCACTCTTCCTGAATTCGCTTCACCAATTTATT
TGATGGCTGCTCCAATGATG
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