CV884212

Overview
NameCV884212
Unique NameCV884212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  447 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 776
            ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct:   70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  447 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 776
            ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+  ++    Q   T+    +L + E SAK+  N  + F+ +A+KL
Sbjct:   70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  447 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 776
            ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct:   70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 45/144 (31.25%), Postives = 74/144 (51.39%), Query Frame = -2
Query:  408 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 827
            TIGV+        +   I+   WDTAGQE+F  +   YY      I ++DVT +L++ ++  TW +D+ +    N+  +L GNK+D+   +V +     H   + N+ Y E SAK++ N EK F  +A+ L      +   +PA
Sbjct:   39 TIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPA 182          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  459 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 779
            KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++ +   E++  +L  NK D+ +++V  K K     R+  ++++E SAK+N N EK FL L
Sbjct:   57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTL 166          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 42/123 (34.15%), Postives = 64/123 (52.03%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGVE            ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L      NI I+L GNK D+K+ +  A +   ++  K+ L + E SA    N EK F
Sbjct:   44 TIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAF 166          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  465 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFL 827
            TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ ++P W  +L      NI I+L GNK D+++++    +    F +K+ L + E SA    N E  FL
Sbjct:   47 TIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFL 170          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 46/148 (31.08%), Postives = 70/148 (47.30%), Query Frame = -2
Query:  393 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 827
            TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+ + +  ++        K+ L + E SA    N EK F  +  ++      H V   ALA  E
Sbjct:   44 TIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEI-----YHIVSKKALAAQE 186          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 39/127 (30.71%), Postives = 72/127 (56.69%), Query Frame = -2
Query:  459 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYL 827
            T+GV+           KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q     ++   +++ E SAK N+N ++ FL L
Sbjct:   73 TVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 199          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.250e-11
Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+    +    F ++  L + E SA++ +N E+ F+  A+++
Sbjct:   38 TIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
The following BLAST results are available for this feature:
BLAST of CV884212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
RAB5C_HUMAN1.319e-1136.28Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CHICK1.319e-1135.40Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5C_CANFA1.319e-1136.28Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB1_THEPA1.319e-1131.25Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB10_RAT1.319e-1133.64Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAA2A_ARATH1.319e-1134.15Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11D_TOBAC1.723e-1132.26Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_LOTJA1.723e-1131.08Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB12_MOUSE1.723e-1130.71Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
YPTV4_VOLCA2.250e-1130.77GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884212 ID=CV884212; Name=CV884212; organism=Citrus sinensis; type=EST; length=828bp
AGCGTAATTGATCCTCAATTATCAACACAATATATAAATGAACTAGGATA
TGGGGCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGG
TAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGA
ATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAA
TCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATA
TTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCG
AAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAG
TTCAGCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGG
GAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGT
TTTCTGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGC
TGAGATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCT
TTGCTTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACA
ATTGGGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAAC
ATTCTTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATT
GCCCATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCG
GCAGTGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTC
CAATGGATGAACTTCCACACCAATGGTC
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