CV884212

Overview
NameCV884212
Unique NameCV884212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N E  F
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  387 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 827
            TIGVE        +   ++   WDTAGQE++  +   YY     A++++D+T R T+ ++P W  +L    + NI I+L GNK D+ N R V  +    F  K+ L + E SA    N E  F  +  ++      + V   +LA  E Q
Sbjct:   49 TIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEI-----YNIVNKKSLAADESQ 193          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N E  F
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N E  F
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N E  F
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  KI+   WDTAGQE F  +   YY     A++ +D+T R +++ +  W  ++ ++   NI I L GNK D K+++V   ++   + K+N + ++E SAK   + E  F  +++K+
Sbjct:   37 TIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVESVFDGVSKKV 166          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 42/152 (27.63%), Postives = 81/152 (53.29%), Query Frame = -2
Query:  399 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNLHFVESPALAP 827
            T+G  +       +   ++   WDT GQE+F  +   +Y      I+ FDVT   +++ +  W  D L ++    ++ P+V+ GNK+D+++R+V  + V  + ++K++ Y+E+SAK++ N  + F  LA     +  G    H ++S  L+P
Sbjct:   40 TLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLSP 191          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 43/132 (32.58%), Postives = 61/132 (46.21%), Query Frame = -2
Query:  393 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQVKAKQVTFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 761
            WDT+GQE+F  L   YY      I++FDVT   T  ++  W  D     E       P ++ GNK+D  NR V  K      K     NL Y++ SAK N N E+ F +++ +    P  + +      PPE
Sbjct:   56 WDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQCENQPQSNEI------PPE 181          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 45/133 (33.83%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGV+        +   I+   WDTAGQE+F  +   YY      I ++DVT +L++ ++  TW +D+ +    N+  +L GNK+D+ + +V    +AK V    + N+ Y E SAK++ N EK F  +A+ L
Sbjct:   39 TIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVA--EQNNMNYIEASAKTDSNVEKAFTTIAKAL 169          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 47/148 (31.76%), Postives = 72/148 (48.65%), Query Frame = -2
Query:  393 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 827
            TIGVE            I+   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+ + +  A++   +   K+ L + E SA    N EK F  +  ++      H +   ALA  E
Sbjct:   44 TIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEI-----YHIISKKALAAQE 186          
The following BLAST results are available for this feature:
BLAST of CV884212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
RB11A_MOUSE2.939e-1134.96Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_LOTJA2.939e-1131.33Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11A_HUMAN2.939e-1134.96Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK2.939e-1134.96Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA2.939e-1134.96Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RABQ_DICDI2.939e-1131.54Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB7B_MOUSE2.939e-1127.63Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB7B_DICDI2.939e-1132.58Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAB1_THEAN2.939e-1133.83Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAA2C_ARATH2.939e-1131.76Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884212 ID=CV884212; Name=CV884212; organism=Citrus sinensis; type=EST; length=828bp
AGCGTAATTGATCCTCAATTATCAACACAATATATAAATGAACTAGGATA
TGGGGCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGG
TAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGA
ATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAA
TCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATA
TTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCG
AAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAG
TTCAGCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGG
GAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGT
TTTCTGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGC
TGAGATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCT
TTGCTTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACA
ATTGGGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAAC
ATTCTTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATT
GCCCATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCG
GCAGTGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTC
CAATGGATGAACTTCCACACCAATGGTC
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