CV884212

Overview
NameCV884212
Unique NameCV884212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = -2
Query:  456 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLA 827
            TIG++       +   +I+   WDTAGQE+F  +   YY      ++++DVT   +++NV  W + + +   E+  I L GNK D + NRQV  +Q      K N+ + E SAKSN N +  F  LA
Sbjct:   46 TIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELA 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGVE        +   ++   WDTAGQE++  +   YY     A++++D+T  +T++NV  W ++L     +NI I+L GNK D+++ R V  +    F  ++N  + E SA  + N E  F
Sbjct:   46 TIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAF 168          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = -2
Query:  381 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP-PEVQID 827
            TIGVE       T    I+   WDTAGQE++  +   YY     A++++D+  + TYK+V  W  +L    + NI I+L GNK D+++ R+V   +   F  K  L + E SA  + N E  F  +  ++      H +  P+ +  P+  ID
Sbjct:   45 TIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQI-----YHIMSRPSHSTGPQTTID 192          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 41/135 (30.37%), Postives = 67/135 (49.63%), Query Frame = -2
Query:  453 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCEN----IPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 827
            TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    +++++  WH + L R         P +L GNKVD+    +R V  K+       K N+ Y+E SAK +YN +  FL + +
Sbjct:   40 TIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITK 174          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 42/130 (32.31%), Postives = 67/130 (51.54%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT R +Y NV  W +++ R   EN+  +L GNK D+  ++V        F     + + E SAK+  N E+ F+ +A ++
Sbjct:   40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 38/130 (29.23%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT  +++ NV  W +++ R  C+++  +L GNK D+  +++        +     + + E SAKS+ N E+ F+ +A ++
Sbjct:   40 TIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEI 169          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: CPAS2_DICDI (Circularly permutated Ras protein 2 OS=Dictyostelium discoideum GN=cpras2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 32/111 (28.83%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  441 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIP-IVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 758
            DTAGQE++  +RD YY HG   I+ + + +R +++N+ +++  LCR+  C++   +++ G K D+++++  +K+  + + R     + E SAK+ +N    F  +++  AG
Sbjct: 2853 DTAGQEEYSAMRDQYYRHGDAFILAYSINSRSSFQNLQSYYNQLCRIKDCDSYACVIVIGTKADLEDQRQVSKEDGLLYARSLGAAFIETSAKTGFNVHTAFAIVSKLSAG 2963          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 44/143 (30.77%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  408 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 827
            TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T+  ++     W ++L +    N+ + L GNK D+++ R+V A++   + ++N L + E SAK+  N    F  +A++L   P     ++PA
Sbjct:   42 TIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRL---PRAQPAQNPA 181          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  474 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 779
            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K ++ Y+E SA +  N EK
Sbjct:   67 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARDLAEKYSIPYFETSAATGQNVEK 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIG++           +I+   WDTAGQE+F  +   YY      I+++D+T   +++N+  W + +       +  +L GNK D++  RQV+ +Q     R+  ++++E SAKS+ N ++ F  LAR +
Sbjct:   40 TIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
The following BLAST results are available for this feature:
BLAST of CV884212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
SEC4_CANAL3.838e-1134.65Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RB11B_TOBAC3.838e-1132.52Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11A_DICDI3.838e-1131.37Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB7_ARATH3.838e-1130.37Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB1B_MACFA3.838e-1132.31Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_DICDI3.838e-1129.23Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
CPAS2_DICDI3.838e-1128.83Circularly permutated Ras protein 2 OS=Dictyosteli... [more]
RHN1_NICPL5.013e-1130.77Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RB27B_BOVIN5.013e-1136.79Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RAB13_MOUSE5.013e-1130.00Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884212 ID=CV884212; Name=CV884212; organism=Citrus sinensis; type=EST; length=828bp
AGCGTAATTGATCCTCAATTATCAACACAATATATAAATGAACTAGGATA
TGGGGCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGG
TAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGA
ATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAA
TCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATA
TTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCG
AAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAG
TTCAGCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGG
GAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGT
TTTCTGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGC
TGAGATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCT
TTGCTTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACA
ATTGGGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAAC
ATTCTTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATT
GCCCATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCG
GCAGTGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTC
CAATGGATGAACTTCCACACCAATGGTC
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