CV884212

Overview
NameCV884212
Unique NameCV884212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIG++           KI+   WDTAGQE+F  +   YY      I+++D+T   +++N+  W + +       +  +L GNK D++  R+V+ +Q     R+  ++++E SAKS+ N ++ F  LAR +
Sbjct:   40 TIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = -2
Query:  453 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV--KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 827
            TIG +    +   +  K+    WDTAGQE+F  L   +Y    C +++FDV    ++ ++  W  +          +N P V+ GNK+D    NRQV  K+       K ++ Y+E SAK + N E  F  + R
Sbjct:   40 TIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGNKIDEVGVNRQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITR 173          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = -2
Query:  393 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLA----RKLAGDPNLHFVESPALAPPE 827
            TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+ +++V    V   F  +  + + E SAK+  N E+ F+ +A     ++A  P       P + P E
Sbjct:   40 TIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQE 191          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  441 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQVTFH-RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 827
            TIG++      +     +R   WDTAGQE+F  L   Y      A+I++DV +R ++ N   W  ++      ++ +VL GNK D V  RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   41 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = -2
Query:  474 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 779
            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct:   67 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = -2
Query:  465 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFL 827
            TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ ++P W  +L      NI I+L GNK D+++++    +    F +K+ L + E SA      E  FL
Sbjct:   47 TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFL 170          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA    N E  F
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAF 165          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAS1_RHIRA (Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 35/108 (32.41%), Postives = 68/108 (62.96%), Query Frame = -2
Query:  447 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVK-NRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 758
            DTAGQE++  +R+ Y  +G+  ++++ +T+RL+++ + T+++ +CRV +    P+VL GNK D++ +RQV +++     K    Q+ E SAK   N ++ F  + R +
Sbjct:   64 DTAGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQICRVKDRDYFPMVLVGNKCDLEGDRQVSSQEGRDLAKNFGCQFIETSAKQRINVDEAFFEVVRDI 171          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = -2
Query:  453 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 761
            WDTAGQE+F  L   +Y    C ++++DV    +++N+  W  +          EN P V+ GNK+DV    +R V  K+       K N+ Y+E SAK  +N +  F  +A+
Sbjct:   62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAK 174          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIG++           KI+   WDTAGQE+F  +   YY      I+++D+T   +++N+  W + +       +  +L GNK D++  R+V+ +Q     R+  ++++E SAKS+ N ++ F  LAR +
Sbjct:   40 TIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
The following BLAST results are available for this feature:
BLAST of CV884212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
RAB13_BOVIN5.013e-1130.00Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
YPTV5_VOLCA6.547e-1130.60GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]
YPTC1_CHLRE6.547e-1130.26GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RBH1B_ARATH6.547e-1131.82Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RB27B_MOUSE6.547e-1136.79Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]
RB11C_TOBAC6.547e-1131.45Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RB11A_BOVIN6.547e-1134.96Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAS1_RHIRA6.547e-1132.41Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1... [more]
RAB7_PRUAR6.547e-1132.74Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB13_HUMAN6.547e-1130.00Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884212 ID=CV884212; Name=CV884212; organism=Citrus sinensis; type=EST; length=828bp
AGCGTAATTGATCCTCAATTATCAACACAATATATAAATGAACTAGGATA
TGGGGCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGG
TAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGA
ATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAA
TCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATA
TTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCG
AAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAG
TTCAGCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGG
GAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGT
TTTCTGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGC
TGAGATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCT
TTGCTTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACA
ATTGGGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAAC
ATTCTTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATT
GCCCATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCG
GCAGTGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTC
CAATGGATGAACTTCCACACCAATGGTC
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