CV884212

Overview
NameCV884212
Unique NameCV884212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884212_ssr336 microsatellite CV884212_ssr336:336..347. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12573 contig Csv1_Contig12573:204..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -2
Query:  426 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 827
            TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T+++VP W  ++ +    N+ I+L GNK D+ + R V  +      +K+  L   E SAK + N ++ F+ +A++L    +LH
Sbjct:   49 TIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIARNSLH 186          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV--KNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            T+G+ +       +  +++   WDTAGQE+F  +   YY      ++++DVT + TY N+  W  ++     E++ IVL GNK D     RQVK +      R+ N+ + E SAK+  N E  F  +AR+L
Sbjct:  223 TVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVARQL 353          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = -2
Query:  447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827
            TIG++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+ +++V  K K     R+  ++++E SAK N N EK FL LA  +
Sbjct:   41 TIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDI 170          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = -2
Query:  468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 827
            TIGV+        +   I   CWDTAGQE+F  +  GYY     A+I++D+T+++++KNV  W  +L  + E +I I++ GNK D++ +R+V  K+   F     + + E SA ++ N  + F
Sbjct:   42 TIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSF 164          
The following BLAST results are available for this feature:
BLAST of CV884212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
RAB19_MOUSE5.356e-1333.33Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB26_DROME6.995e-1332.82Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB14_RAT6.995e-1335.61Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB6.995e-1335.61Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG6.995e-1335.61Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE6.995e-1335.61Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN6.995e-1335.61Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK6.995e-1335.61Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB10_CANFA6.995e-1332.31Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RB11C_DICDI9.136e-1334.15Ras-related protein Rab-11C OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884212 ID=CV884212; Name=CV884212; organism=Citrus sinensis; type=EST; length=828bp
AGCGTAATTGATCCTCAATTATCAACACAATATATAAATGAACTAGGATA
TGGGGCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGG
TAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGA
ATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAA
TCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATA
TTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCG
AAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAG
TTCAGCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGG
GAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGT
TTTCTGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGC
TGAGATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCT
TTGCTTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACA
ATTGGGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAAC
ATTCTTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATT
GCCCATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCG
GCAGTGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTC
CAATGGATGAACTTCCACACCAATGGTC
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