CV884211

Overview
NameCV884211
Unique NameCV884211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 569
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 569
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 569
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 55/161 (34.16%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 569
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+  ++    Q   T+    +L + E SAK+  N  + F+ +A+KL
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 569
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 61/184 (33.15%), Postives = 98/184 (53.26%), Query Frame = 3
Query:   75 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 617
            +T D+  FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +   NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ FL  AR +   PN   +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI---PNK--IESGELDP 180          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 58/184 (31.52%), Postives = 100/184 (54.35%), Query Frame = 3
Query:   75 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 617
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIG+E            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI ++LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKI-----LNKIESGELDP 180          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 3
Query:   75 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 617
            +T D+  FK +++G+ GTGK+  + + +   F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDP 180          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.297e-18
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   69 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP-PEVQID 635
            +Q+  DY  +K+V++GD G GK+  + R    EF  + + TIGVE       T    I+   WDTAGQE++  +   YY     A++++D+  + TYK+V  W  +L    + NI I+L GNK D+++ R+V   +   F  K  L + E SA  + N E  F  +  ++      H +  P+ +  P+  ID
Sbjct:    6 SQEEYDY-LYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQI-----YHIMSRPSHSTGPQTTID 192          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.297e-18
Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 3
Query:   75 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 617
            +T D+  FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+   R+V   + + F ++  L + E SA +  N E+ FL  AR +     L+ ++S  L P
Sbjct:    3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180          
The following BLAST results are available for this feature:
BLAST of CV884211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5C_PONAB9.928e-1934.78Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE9.928e-1934.78Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_HUMAN9.928e-1934.78Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CHICK9.928e-1934.16Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5C_CANFA9.928e-1934.78Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB4B_DANRE9.928e-1933.15Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB4A_MOUSE9.928e-1931.52Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB4A_DANRE9.928e-1932.61Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RB11A_DICDI1.297e-1831.61Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB4B_RAT1.297e-1831.52Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884211 ID=CV884211; Name=CV884211; organism=Citrus sinensis; type=EST; length=912bp
CCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAACAAAT
CAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGCTTCAA
ACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTTGTGAAGA
GGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTTGTCGAGT
CTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGCTCAGCAA
CAACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAACCTCTCCCAGATGA
AGATGATGACGCCTTCGAGTGAAAGAAGACAATGGATCGTGTGATTATTG
GAGTGAAGAGTTCAATATTGATTGTTTTGAGGATCTGTTGGGTGTCTTTT
GACATGAGCTTTGGATTGAACCATTGCTGGCTTATTTAGCATTGTGTTTC
TTACTCTTGCCTAATTCATGTCAGTCTCTACTTGTTTTTGTTTTCGCGTC
TACATTCTCTGT
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