CV884211

Overview
NameCV884211
Unique NameCV884211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.773e-18
Identity = 50/165 (30.30%), Postives = 84/165 (50.91%), Query Frame = 3
Query:   99 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 563
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV    +++N+  W  +          EN P V+ GNK+DV    +R V  K+       K N+ Y+E SAK  +N +  F  +A+
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAK 174          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.773e-18
Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 569
            FKL+++GD G GKT  + R     F   Y  TIG++           KI+   WDTAGQE+F  +   YY      I+++D+T   +++N+  W + +       +  +L GNK D++  R+V+ +Q     R+  ++++E SAKS+ N ++ F  LAR +
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 52/165 (31.52%), Postives = 88/165 (53.33%), Query Frame = 3
Query:   93 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 569
            S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAGQE+F  L   YY + Q A++++DVT   ++     W ++L  +  ++I I L GNK+D+     + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct:    7 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 171          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 57/173 (32.95%), Postives = 95/173 (54.91%), Query Frame = 3
Query:   99 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 608
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T+  ++     W ++L +    N+ + L GNK D+++ R+V A++   + ++N L + E SAK+  N    F  +A++L   P     ++PA
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRL---PRAQPAQNPA 181          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 53/162 (32.72%), Postives = 83/162 (51.23%), Query Frame = 3
Query:   75 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFL 551
            Q +DY  FK+V++GD   GKT  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ ++P W  +L      NI I+L GNK D+++++    +    F +K+ L + E SA      E  FL
Sbjct:   10 QKIDYV-FKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFL 170          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 54/154 (35.06%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 548
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA    N E  F
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAF 165          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   69 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 548
            + Q  DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      F N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V + +   H  + L  +++E SAK N N ++ F
Sbjct:   23 SDQNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTF 184          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   69 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 548
            + Q  DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      F N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V + +   H  + L  +++E SAK N N ++ F
Sbjct:   23 SDQNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTF 184          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV----TFHRKKNLQYYEISAKSNYNFEKPF 548
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++DVT   T++NV TW ++L    + NI ++L GNK D+  R + A Q     +F  K++L + E SA    N E  F
Sbjct:   14 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDL--RHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAF 167          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.435e-18
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 3
Query:   54 LMALPNQQTVDYPSF-KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV---KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 569
            + A P +   DY    KL+++GD G GK+  + R   G F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++DVT   ++ N+  W R++     +N+  +L GNK D+   K     AK      +  ++++E SAK+N N E+ F  +AR +
Sbjct:    1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177          
The following BLAST results are available for this feature:
BLAST of CV884211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7_PRUAR3.773e-1830.30Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB13_HUMAN3.773e-1831.68Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
VPS21_YEAST4.927e-1831.52Vacuolar protein sorting-associated protein 21 OS=... [more]
RHN1_NICPL4.927e-1832.95Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RB11C_TOBAC4.927e-1832.72Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RB11A_BOVIN4.927e-1835.06Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB3C_HUMAN4.927e-1830.67Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN4.927e-1830.67Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAA1C_ARATH4.927e-1835.26Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB1BV_BETVU6.435e-1829.94Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884211 ID=CV884211; Name=CV884211; organism=Citrus sinensis; type=EST; length=912bp
CCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAACAAAT
CAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGCTTCAA
ACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTTGTGAAGA
GGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTTGTCGAGT
CTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGCTCAGCAA
CAACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAACCTCTCCCAGATGA
AGATGATGACGCCTTCGAGTGAAAGAAGACAATGGATCGTGTGATTATTG
GAGTGAAGAGTTCAATATTGATTGTTTTGAGGATCTGTTGGGTGTCTTTT
GACATGAGCTTTGGATTGAACCATTGCTGGCTTATTTAGCATTGTGTTTC
TTACTCTTGCCTAATTCATGTCAGTCTCTACTTGTTTTTGTTTTCGCGTC
TACATTCTCTGT
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