CV884211

Overview
NameCV884211
Unique NameCV884211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884211_ssr668 microsatellite CV884211_ssr668:668..679. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12573 contig Csv1_Contig12573:17..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.959e-91
Identity = 160/210 (76.19%), Postives = 176/210 (83.81%), Query Frame = 3
Query:   78 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 707
            + + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:    2 SAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 211          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 2.166e-90
Identity = 157/208 (75.48%), Postives = 175/208 (84.13%), Query Frame = 3
Query:   84 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 707
            + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEV+PL F TN G+++F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVNPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 8.231e-90
Identity = 159/211 (75.36%), Postives = 173/211 (81.99%), Query Frame = 3
Query:   75 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 707
            Q  + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+I F  WDTAGQEK GGLRDGYYI GQC IIMFDVT+R+TYKNVP W RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+PNL FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:    3 QPQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.075e-89
Identity = 158/209 (75.60%), Postives = 173/209 (82.78%), Query Frame = 3
Query:   84 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 710
            D P+FKLV+VGDGGTGKTTFVKRHLTG+FEKKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCA  MFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+LARKL GDPNL FV  PALAPPEVQ+D               +  LPD+D+D
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.834e-89
Identity = 155/213 (72.77%), Postives = 174/213 (81.69%), Query Frame = 3
Query:   72 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 710
            Q+  D P+FK V+VGDGGTGKTTFVKRH+TGEFEKKY  T+GVEVHPL F TN G IRF  WDTAGQEKFGGLRDGYYI GQCA+IMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D               +  LPDED++
Sbjct:    3 QEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEE 215          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 9.101e-89
Identity = 155/205 (75.61%), Postives = 169/205 (82.44%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 710
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D                  LPDEDDD
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.552e-88
Identity = 156/205 (76.10%), Postives = 169/205 (82.44%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 710
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDD 215          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 326.25 bits (835), Expect = 1.552e-88
Identity = 156/205 (76.10%), Postives = 169/205 (82.44%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 710
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 326.25 bits (835), Expect = 1.552e-88
Identity = 156/205 (76.10%), Postives = 169/205 (82.44%), Query Frame = 3
Query:   96 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 710
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CV884211 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.552e-88
Identity = 157/209 (75.12%), Postives = 172/209 (82.30%), Query Frame = 3
Query:   84 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDD 710
            D P+FKLV+VGDGGTGKTTFVKRHLTG+ EKKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGN VDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+L RKL GDPNL FV  PALAPPEVQ+D               +  LPD+D+D
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDPEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNFVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
The following BLAST results are available for this feature:
BLAST of CV884211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_CANGA1.959e-9176.19GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
GSP1_CANAL2.166e-9075.48GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
SPI1_SCHPO8.231e-9075.36GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RAN_BRUMA1.075e-8975.60GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
RAN_DROME1.834e-8972.77GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RAN_DANRE9.101e-8975.61GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN_XENLA1.552e-8876.10GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT1.552e-8876.10GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB1.552e-8876.10GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_ONCVO1.552e-8875.12GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884211 ID=CV884211; Name=CV884211; organism=Citrus sinensis; type=EST; length=912bp
CCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAACAAAT
CAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGCTTCAA
ACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTTGTGAAGA
GGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTTGTCGAGT
CTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGCTCAGCAA
CAACATGAAGCTGAACTTGCTGCTGCTGCTAGTCAACCTCTCCCAGATGA
AGATGATGACGCCTTCGAGTGAAAGAAGACAATGGATCGTGTGATTATTG
GAGTGAAGAGTTCAATATTGATTGTTTTGAGGATCTGTTGGGTGTCTTTT
GACATGAGCTTTGGATTGAACCATTGCTGGCTTATTTAGCATTGTGTTTC
TTACTCTTGCCTAATTCATGTCAGTCTCTACTTGTTTTTGTTTTCGCGTC
TACATTCTCTGT
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