CV884210

Overview
NameCV884210
Unique NameCV884210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884210_ssr54 microsatellite CV884210_ssr54:54..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10284 contig Csv1_Contig10284:452..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.391e-37
Identity = 71/158 (44.94%), Postives = 98/158 (62.03%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y+M+GF W A +FFW+L+ +  SF+ FT YGMM VA+TP   I +++S  F  +WNLFSGFLIPR  +P+WW WYYWL PVAWTLYGL+ SQ GDI      P + + M+VKQ +++ +G++                     F + I   NFQ+R
Sbjct: 1270 IVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITE----PMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.285e-37
Identity = 74/158 (46.84%), Postives = 96/158 (60.76%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            ++YSM+GF W   +F W+L+ +  + + FT YGMM V LTP   I AI+S  F ++WNLFSG+LIPR +IP+WWRWY W+ PVAWTLYGLV SQ GDI+  +E      T TV Q + D FGF ++                   F+ AI   NFQRR
Sbjct: 1297 LVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE----GDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.016e-37
Identity = 72/158 (45.57%), Postives = 96/158 (60.76%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+YS++GF W  ++FFW+++ +  +FM FT YGMM VA+TP   I AI+S  F  +WN+F+GFLIPR +IPIWWRWY W  PVAWTLYGLV SQ GDI  +    G      V+  ++  FGF++D                   F  +I + NFQRR
Sbjct: 1291 IVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGE----VVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 9.016e-37
Identity = 69/158 (43.67%), Postives = 94/158 (59.49%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I YS+  F W A +F W+L+ +  + + FT YGMM  A+TP   +  I++  F +LWNLF GF+IPR +IP WWRWYYW +PV+WTLYGL+TSQ GD++  + +     T T    L+D FGF++D                   F LAI  +NFQRR
Sbjct: 1293 IFYSLGSFEWTAVKFLWYLFFMYFTLLYFTFYGMMTTAITPNHTVAPIIAAPFYTLWNLFCGFMIPRKRIPAWWRWYYWANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.538e-36
Identity = 70/158 (44.30%), Postives = 96/158 (60.76%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            ++YSM+GF W A +F W+++ +  +F+ FT YGMM VA+TP   I AI++  F ++WN+F+GF+IPR +IPIWWRWYYW  PVAWTLYGLV SQ G+    +    S    TVK  L+   GF++D                   F  +I  +NFQRR
Sbjct: 1288 LVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTM----SDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.632e-36
Identity = 73/158 (46.20%), Postives = 96/158 (60.76%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y+M+GF W A +FFW+L+ ++ + + FT YGMM V LTP   I +I+S  F ++WNLFSGF+IPR ++PIWWRWY W  PVAWTLYGLV SQ GDIE  +E         VK  +++ FGFK+                    F  AI   NFQ+R
Sbjct: 1305 IVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME-----DGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.632e-36
Identity = 73/158 (46.20%), Postives = 96/158 (60.76%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y+M+GF W A +FFW+L+ ++ + + FT YGMM V LTP   I +I+S  F ++WNLFSGF+IPR ++PIWWRWY W  PVAWTLYGLV SQ GDIE  +E         VK  +++ FGFK+                    F  AI   NFQ+R
Sbjct: 1305 IVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME-----DGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.968e-36
Identity = 73/158 (46.20%), Postives = 96/158 (60.76%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+YSM+GF W A +FFW+L+ +  +F+ FT YGMM V LTP+  + +I+S  F  +WNLFSGF+IPR ++PIWWRWY W+ PVAWTLYGLV SQ GDI      P    T  VK  +++ F FK+                    F  AI  +NFQ+R
Sbjct: 1312 IVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI----MTPMDDGT-PVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.302e-35
Identity = 69/158 (43.67%), Postives = 95/158 (60.13%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y MM F W   +FFWF Y+   +F+ FT YGMM V+++P  Q+ +IL   F +L+NLFSGF IPR +IP WW WYYWL PVAWT+YGL+ SQ GD+E  + +PG  +   V+  +KD FG+  D                   +  +I  +NFQ+R
Sbjct: 1353 IVYPMMSFQWTPAKFFWFFYVSFFTFLYFTYYGMMNVSVSPNLQVASILGAAFYTLFNLFSGFFIPRPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFITVPGQ-SDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.455e-34
Identity = 66/158 (41.77%), Postives = 93/158 (58.86%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y+MM F W A +FFWF ++   SF+ FT YGMM VA++P  ++ AI +  F SL+NLFSGF IPR +IP WW WYYWL P+AWT+YGL+ +Q GD+E  + +PG  +  T+   +   FG+                      + + I  +NFQ R
Sbjct: 1344 IVYAMMSFQWTAAKFFWFFFVSYFSFLYFTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYYWLCPLAWTVYGLIVTQYGDLEQIISVPGQ-SNQTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500          
The following BLAST results are available for this feature:
BLAST of CV884210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
AB40G_ARATH1.391e-3744.94ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR4_ORYSJ5.285e-3746.84Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR7_ORYSJ9.016e-3745.57Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR6_ORYSJ9.016e-3743.67Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
TUR2_SPIPO1.538e-3644.30Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR3_ORYSJ7.632e-3646.20Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI7.632e-3646.20Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR2_ORYSJ9.968e-3646.20Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR15_ORYSJ1.302e-3543.67Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
PDR12_ORYSJ2.455e-3441.77Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884210 ID=CV884210; Name=CV884210; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTCCATTAATTCTACATATTATATATATTTTTTAAC
TTTTATATATATATATATATACATGTTTGAAAATACTCTAGAAATTGTTG
AATACCCGAGTAAAGGAGGCAGTAAGTATACAGAAGTAACGGAATTGGAA
AGGGTCCTTGATCAAATTCAAGACTCTGCCATTCTGGTCTGGCGGCCTGC
AACAAAAATCTGGACAAAAGAATGATCAATGCACAAGGAATAAAGAATGC
GCAAAGTGGTAACAACCTTTTATTCCCCTCGCCTCATTCATGACTAACAA
TTACATCAAACATTTCCTACCATATGTTGGAGATTTTCGAGCTATTTATC
TCCTCTGGAAGTTAATTAAGGTGATGGCAAGGGTAAACACAAAGACGAAG
ACGAGAAGCCAGACAAGTTTGACTACAGCAACAACCGGAAGGAAGTCATA
CTTGAACCCGAAACTATCTTTTAGAAGCTGCTTCACTGTCATCGTAGCGG
TGCTTCCCGGAATTTCCACGTTGCCTTCTATGTCACCAACTTGACTTGTA
ACAAGGCCATAGAGTGTCCAAGCCACGGGAGAGAGCCAGTAGTACCACCT
CCACCAAATTGGGATTTGCACGCGAGGAATGAGAAAACCAGAGAACAAAT
TCCACAGGGAGAGGAAGAATCCGGAAAGTATGGCACCAATTTGCGGAGCT
GGAGTCAGTGCGACAATCATCATCCCATACAATGTGAATTGCATAAAGGA
CATCATTACCATGTACAAGAACCAGAAGAATCTTTTTGCTTTCCACGCAA
ATCCCATCATGGAGTATAGGATCA
back to top