CV884210

Overview
NameCV884210
Unique NameCV884210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.119e-32
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+YSM+GF W   +FFW+L+ +  + + FT YGMM V LTP+  + +I+S  F ++WNLF+GF+I R   P+WWRWY W+ PVAWTLYGL+ SQ GDI     +      + V   +++ F FK+                    F  AI  +NFQ+R
Sbjct: 1316 IVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDI-----VTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.378e-29
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I Y M+G+ W A + FW+ Y +  + + FT  GMM+V++TP+  + AIL   F +++NLF+GFL+P+ QIP WW W+Y+L+P +WTL G++TSQ GDIE   EI       TV   L D FGF ++                   F   I  +NFQRR
Sbjct: 1292 ITYPMIGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIE--KEITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.991e-28
Identity = 61/158 (38.61%), Postives = 89/158 (56.33%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I Y  +GF     +F  +L  + ++F  FT YGMM V LTP   + A++S  F SLWNL SGFL+ +  IP+WW W+Y++ PVAWTL G++ SQ+GD+E  +  P      TVK+ ++  FG+K +                   F L++  +NFQRR
Sbjct: 1271 ITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEP--LFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.797e-27
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = -3
Query:  352 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQR 822
            I Y M+ +    ++   +L  + ++F  FT YGM+ V LTP   + +++S  F SLWNL SGFLIP+ +IP WW W+Y++ PVAWTL G++TSQ+GD++  +  PG     TV + L+ + GF+                     + ++I +INFQR
Sbjct: 1286 ITYFMVNYERNIRKLVLYLIYMFLTFTYFTFYGMVAVGLTPTQHMASVVSSAFYSLWNLLSGFLIPQSRIPGWWIWFYYICPVAWTLRGVITSQLGDVDTRIVGPGFDG--TVHEFLQQNLGFEQGMTGATVAVLVAFSVFFFSIYAISIKMINFQR 1440          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.105e-26
Identity = 61/158 (38.61%), Postives = 85/158 (53.80%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            + Y M+GF   A + FW LY +  S + F    M +V++TP   + AIL   F   +NLFSGFLIP+ Q+P WW W Y+L+P +WTL G ++SQ GDI   + + G +   TV + LKD FGF +D                   F   +  +NFQRR
Sbjct: 1295 VTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQST--TVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.034e-24
Identity = 56/158 (35.44%), Postives = 87/158 (55.06%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y M+G+     + FW LY +  S + F   GM++VALTP   +   L   F S+ NLF+GF++P+ +IP WW W Y+LSP +W L GL++SQ GD+E  + + G     +V   L+D FG+K+D                   F   ++ +NFQ++
Sbjct: 1242 IVYPMIGYHMSVYKMFWSLYSIFCSLLIFNYCGMLMVALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITVFGE--KKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFMSKLNFQKK 1397          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.303e-24
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y M+G+ W   + FW  Y +  S + F  +GM++V +TP   I   L   F ++ NLF+G+++P+  IP WW W Y+LSP +W L GL+TSQ GD+E   EI        V   L+D FG++YD                   F   I  +NFQ++
Sbjct: 1235 IVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDME--KEILAFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1390          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.929e-24
Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            ++Y M+GF     + FW LY +  + + F    M ++++TP   + AIL   F + +N+F+GFLIP+ QIP WW W+Y+++P +WTL    +SQ GDI   +   G   T TV   L+D FGF +D                   +   +  +NFQ+R
Sbjct: 1258 VIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGE--TKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.131e-24
Identity = 55/158 (34.81%), Postives = 83/158 (52.53%), Query Frame = -3
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y M+G+ W   + FW  Y +  + + F  +GM++V +TP   I   L   F ++ NLF+G+++P+  IP WW W Y+LSP +W L GL+TSQ GD+E   EI        V   L+D FG++YD                   F   I  +NFQ++
Sbjct: 1237 IVYPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDME--KEILAFGEKKKVSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392          
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.326e-23
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = -3
Query:  445 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYD 822
            I+Y  +G+     + FW LY +  S + F   GM++VALTP   +   L   F S+ NLF+GF+IP+ +IP WW W Y+LSP +W L GL++SQ GD++  + + G      V   L+D FG+K++
Sbjct: 1245 IVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGE--KKRVSAFLEDYFGYKHE 1368          
The following BLAST results are available for this feature:
BLAST of CV884210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PDR1_ORYSJ5.119e-3240.51Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR3_TOBAC2.378e-2940.51Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB31G_ARATH9.991e-2838.61ABC transporter G family member 31 OS=Arabidopsis ... [more]
PDR13_ORYSJ3.797e-2736.94Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
AB37G_ARATH1.105e-2638.61ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB41G_ARATH1.034e-2435.44ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB43G_ARATH2.303e-2435.44ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB33G_ARATH3.929e-2433.54ABC transporter G family member 33 OS=Arabidopsis ... [more]
AB42G_ARATH5.131e-2434.81ABC transporter G family member 42 OS=Arabidopsis ... [more]
AB30G_ARATH3.326e-2339.68ABC transporter G family member 30 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884210 ID=CV884210; Name=CV884210; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTCCATTAATTCTACATATTATATATATTTTTTAAC
TTTTATATATATATATATATACATGTTTGAAAATACTCTAGAAATTGTTG
AATACCCGAGTAAAGGAGGCAGTAAGTATACAGAAGTAACGGAATTGGAA
AGGGTCCTTGATCAAATTCAAGACTCTGCCATTCTGGTCTGGCGGCCTGC
AACAAAAATCTGGACAAAAGAATGATCAATGCACAAGGAATAAAGAATGC
GCAAAGTGGTAACAACCTTTTATTCCCCTCGCCTCATTCATGACTAACAA
TTACATCAAACATTTCCTACCATATGTTGGAGATTTTCGAGCTATTTATC
TCCTCTGGAAGTTAATTAAGGTGATGGCAAGGGTAAACACAAAGACGAAG
ACGAGAAGCCAGACAAGTTTGACTACAGCAACAACCGGAAGGAAGTCATA
CTTGAACCCGAAACTATCTTTTAGAAGCTGCTTCACTGTCATCGTAGCGG
TGCTTCCCGGAATTTCCACGTTGCCTTCTATGTCACCAACTTGACTTGTA
ACAAGGCCATAGAGTGTCCAAGCCACGGGAGAGAGCCAGTAGTACCACCT
CCACCAAATTGGGATTTGCACGCGAGGAATGAGAAAACCAGAGAACAAAT
TCCACAGGGAGAGGAAGAATCCGGAAAGTATGGCACCAATTTGCGGAGCT
GGAGTCAGTGCGACAATCATCATCCCATACAATGTGAATTGCATAAAGGA
CATCATTACCATGTACAAGAACCAGAAGAATCTTTTTGCTTTCCACGCAA
ATCCCATCATGGAGTATAGGATCA
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