CV884210

Overview
NameCV884210
Unique NameCV884210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884210_ssr54 microsatellite CV884210_ssr54:54..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10284 contig Csv1_Contig10284:452..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.156e-22
Identity = 47/158 (29.75%), Postives = 89/158 (56.33%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y M+G+ W A +FF  ++   +S +     G+M+++++P  +I +IL+G   + WN+FSGF IPR ++ +W RW+ ++ P  W LYGL  +Q GD+E  ++        TV + +K+ +G++Y+                   +  ++ ++NFQ+R
Sbjct: 1266 IVYGMIGYEWTASKFFLNIFFTFISILYSIYTGIMVISVSPNQEIASILNGVISTSWNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTIAQYGDVETRLD-----TGETVVEFMKNYYGYEYNFLWVVSLTLIAFSMFFVFIYAFSVKILNFQKR 1418
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 29/94 (30.85%), Postives = 54/94 (57.45%), Query Frame = -3 
Query:  541 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQ 822
            ++Y M G    A++F +FL M  +  + F  +  M+ A  P   + ++++   L+ + LFSGF+ P+  I  WW W YW+SP+ +   GL++++
Sbjct:  490 LVYWMCGLQANAEKFIYFLLMNFVGDLAFQSFFKMVSAFAPNATLASVIAPAALAPFILFSGFMAPKRSIGGWWIWIYWISPIKYAFEGLMSNE 583
The following BLAST results are available for this feature:
BLAST of CV884210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
AB38G_ARATH2.156e-2229.75ABC transporter G family member 38 OS=Arabidopsis ... [more]
ABCG2_DICDI8.497e-1130.85ABC transporter G family member 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884210 ID=CV884210; Name=CV884210; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTCCATTAATTCTACATATTATATATATTTTTTAAC
TTTTATATATATATATATATACATGTTTGAAAATACTCTAGAAATTGTTG
AATACCCGAGTAAAGGAGGCAGTAAGTATACAGAAGTAACGGAATTGGAA
AGGGTCCTTGATCAAATTCAAGACTCTGCCATTCTGGTCTGGCGGCCTGC
AACAAAAATCTGGACAAAAGAATGATCAATGCACAAGGAATAAAGAATGC
GCAAAGTGGTAACAACCTTTTATTCCCCTCGCCTCATTCATGACTAACAA
TTACATCAAACATTTCCTACCATATGTTGGAGATTTTCGAGCTATTTATC
TCCTCTGGAAGTTAATTAAGGTGATGGCAAGGGTAAACACAAAGACGAAG
ACGAGAAGCCAGACAAGTTTGACTACAGCAACAACCGGAAGGAAGTCATA
CTTGAACCCGAAACTATCTTTTAGAAGCTGCTTCACTGTCATCGTAGCGG
TGCTTCCCGGAATTTCCACGTTGCCTTCTATGTCACCAACTTGACTTGTA
ACAAGGCCATAGAGTGTCCAAGCCACGGGAGAGAGCCAGTAGTACCACCT
CCACCAAATTGGGATTTGCACGCGAGGAATGAGAAAACCAGAGAACAAAT
TCCACAGGGAGAGGAAGAATCCGGAAAGTATGGCACCAATTTGCGGAGCT
GGAGTCAGTGCGACAATCATCATCCCATACAATGTGAATTGCATAAAGGA
CATCATTACCATGTACAAGAACCAGAAGAATCTTTTTGCTTTCCACGCAA
ATCCCATCATGGAGTATAGGATCA
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