CV884205

Overview
NameCV884205
Unique NameCV884205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884205_ssr756 microsatellite CV884205_ssr756:756..767. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7277 contig Csv1_Contig7277:1..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.113e-27
Identity = 73/195 (37.44%), Postives = 106/195 (54.36%), Query Frame = -1
Query:  156 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 722
            + DFCVADL    +  GYPC  P     D+F+FS  L   G+  +  N + VT   VA +P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I S  + N  Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK    G
Sbjct:   32 LQDFCVADLDSEVTLNGYPC-KPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 225          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.372e-27
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = -1
Query:  156 VNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 722
            + DFCVADL   + S  G+ C P +    DDF+FS  L  AGNT++   +AVT   VA++P  N LG+S+ R+D A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF ++  + + ++ +   ++   V+ LK    G
Sbjct:    6 LQDFCVADLDGKAVSVNGHTCKPMSEA-GDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAG 199          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.016e-27
Identity = 65/160 (40.62%), Postives = 94/160 (58.75%), Query Frame = -1
Query:  243 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 722
            + D CVAD        G+ C P + VTA+DF  + L   G T +   + VT A V + P +N LG+S+AR+D A GG+ P HTHP A+E++ V+ G +  GFI+++ N +  KT+ KG+  +FP+GL+HFQ N+G + A     FNS  PG       LF
Sbjct:   26 LQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTT-NQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLF 184          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.016e-27
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = -1
Query:  267 AMVNDFCVADLKLSDSPA--GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 728
            + + DFCV+    ++     G  C  P +VTADDF F GL  A   TS + + VT   V     +N LG+SL R+D A  G  P HTHP A+EIL+V  G +  GF++S+  N ++ K L +GD+ +FP+GL+HFQ N G   A+ F + +S NPG+
Sbjct:   28 SQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGV 184          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 71/195 (36.41%), Postives = 107/195 (54.87%), Query Frame = -1
Query:  156 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 722
            + DFCVADL    +  G+ C  PA    D+F+FS  +   G+  +  N + VT   VA++P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I +  + N  Y K ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK    G
Sbjct:   32 LQDFCVADLNSEVTVNGHAC-KPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 225          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = -1
Query:  267 VNDFCVADLKLSDSPA--GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSS--ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 722
            + DFCV     +D     G  C  P +V ADDF FS L   GNT + + + VT   V     +N LG+SL R+D A  G  P HTHP A+EIL+V  G +  GFISS+   N ++ KTL  GD+ +FP+GL+HFQ N G   A+   + +S N G+
Sbjct:   30 LQDFCVGVNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGV 185          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 63/164 (38.41%), Postives = 98/164 (59.76%), Query Frame = -1
Query:  237 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 722
            + DFCVAD+       G+PC  P  VT+DDF  +    +  NT + + + VT   V  FP +N LG+SLAR+D A  GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD+ +FP+ ++HFQ+N   +  A+   + +S NPG+     A+F +
Sbjct:   29 LQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGS 192          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 71/195 (36.41%), Postives = 107/195 (54.87%), Query Frame = -1
Query:  156 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 722
            + DFCVADL    +  G+ C  PA    D+F+FS  +   G+  +  N + VT   VA++P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I +  + N  Y K ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK    G
Sbjct:   34 LQDFCVADLDSKVTVNGHAC-KPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 227          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 70/191 (36.65%), Postives = 103/191 (53.93%), Query Frame = -1
Query:  171 VNDFCVADLKLSDSP-------AGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 722
            + DFC+   K   SP          PC   + VT +DFVFSGL  AGN T     A  P     FP +N LG+S  R DL  G + P H HP A+E+  +V G + +GF+ S+ N VY K +++G++M++P+GL+HFQ+N G   A      NS NPG+Q     +F + ++ +L+ +   L    +  LK
Sbjct:   30 IQDFCIP--KPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTET-GFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSN-NKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGSGINEELLMKAFGLSLKQIGTLK 216          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = -1
Query:  165 VNDFCVADLKLSDSPA-GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGI 722
            + D+CVA  + +     G  C  P  VTA+DF  SGL V GNT++     +T   V + P +N LG+ +AR+D A GG+ P HTHP  SEI LV+ G +  GF+SS+    T++ K L  GD+ +FP+GL+ F  N G   A+   +  S NPG  I   A+F +   +  +++ +   LD   VK  + +
Sbjct:   30 LQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVKYFQAV 220          
The following BLAST results are available for this feature:
BLAST of CV884205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL33_ORYSJ4.113e-2737.44Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
OXO1_HORVU5.372e-2737.95Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
RHRE_PEA7.016e-2740.63Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL110_ARATH7.016e-2741.40Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL35_ORYSJ1.197e-2636.41Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL18_ARATH1.197e-2642.31Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL83_ORYSJ1.563e-2638.41Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ1.563e-2636.41Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL32_ARATH1.563e-2636.65Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL15_ARATH1.563e-2636.65Germin-like protein subfamily 1 member 5 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884205 ID=CV884205; Name=CV884205; organism=Citrus sinensis; type=EST; length=869bp
GAGAATTTTATTTATTCAGAAGAAAAGATAGGGGAAGTGAGAACAGAGAA
AATACTAACTCGTGAATTCCAACAATCAAATACATTAGCAACTAAATGAA
ATTAAGAACTCAAAACTACAAATGAAGAATGTGGTAACTAATAAGCCTAG
CCGGTGCCACCAAGGATACCCTTGAGCCTCTTCACCGTAGCATCGTCAAG
GAAAGTGGTCTGCTCCACCAATTGGGAAGACAAGTTGTTGGCAAATAAGG
CGAAATCGGTGATTTGGAGTCCAGGATTCGGGCTGTTGAAGCTAACAAAA
CCGAGGGCTCCGTCCGCGCCGGAATTTACTTGAAAATGCAACAACCCTTG
TGGAAAGATCATGATATCTCCCTTCTTAAGCGTCTTTACGTAAACAGTGT
TAGCTGAAGAGGAAATGAACCCGGCAGTTATGCAGCCATGCACAACAAGA
AGGATTTCGGAAGCAGCTGGATGAGTGTGCATTGGGATTACGCCACCCTT
TGCAAGATCTAGGCGTGCCAAGGAGAGTCCGAGGCCATTCACGGCCGGAA
ATTGAGCTACAAATGCAGGTGTCACTGCCGCGTTGATAATACTCGTGGTG
TTTCCGGCCACGCCGAGGCCCGAAAATACGAAGTCGTCAGCGGTAACCAT
AGCAGGGGGCACGCAAGGATAGCCGGCGGGACTATCCGACAGCTTTAGGT
CAGCGACGCAGAAGTCGTTAACCATAGCATTGGAGGAAGAGGATACGAAA
GCAAGGAAGAAGAAGAAGAGAATGTGAAGCATTTTGACTAATATTTATTT
TTTTTTTTTTTTTTTATTGGGAATATAAAATTTCATAAGCCAAAGTATAT
AATGATATGTTATTCAAAA
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