EH406492

Overview
NameEH406492
Unique NameEH406492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_HUMAN (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.398e-21
Identity = 45/72 (62.50%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   42 DKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_BOVIN (40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.398e-21
Identity = 45/72 (62.50%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   42 DKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_DANRE (40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.662e-21
Identity = 45/72 (62.50%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+ +GLI++VS H +Q IYTR T
Sbjct:   41 DKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKHRAQVIYTRNT 112          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_ICTPU (40S ribosomal protein S25 OS=Ictalurus punctatus GN=rps25 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.811e-20
Identity = 44/72 (61.11%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A+ EL+++G+I++VS H +Q IYTR T
Sbjct:   41 DKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKHRAQVIYTRNT 112          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_DROME (40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 2.380e-19
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            +K+NN VLFD+ATY+KL  E P YKLITPS++S+RL+I GSLA++A+ EL  +GLI+ V  H SQ IYTRAT
Sbjct:   41 DKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRAT 112          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_SPOFR (40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.015e-18
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            +K+NN VLFD+ TY+KL  E P+YKLITP+++S+RL++ GSLAR+A+ EL  +GLI+ V  H  Q IYTRAT
Sbjct:   41 DKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 112          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_CAEEL (40S ribosomal protein S25 OS=Caenorhabditis elegans GN=rps-25 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.015e-18
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            +K+NNMVLFDQATYDKL  E   YKLITPS++S+RL++  SLA+  ++EL A+GL++ V  H  Q +YTRAT
Sbjct:   38 DKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRAT 109          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_LEIIN (40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.035e-14
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTR 295
            E + N V+FD+ TYDKL SE PKYKLITPSI+SDRL+I  S+A   +++L    LIR+VS  +  ++YTR
Sbjct:   34 EALQNAVMFDKETYDKLRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCSSKTRVYTR 103          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25_DICDI (40S ribosomal protein S25 OS=Dictyostelium discoideum GN=rps25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 35/71 (49.30%), Postives = 54/71 (76.06%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRA 298
            EK+NN +LFD+ TY KLL E P  K+IT +++S+R++ NGSLAR+AI+EL+++GLI+ +       +YT+A
Sbjct:   39 EKLNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKA 109          
BLAST of EH406492 vs. ExPASy Swiss-Prot
Match: RS25A_YEAST (40S ribosomal protein S25-A OS=Saccharomyces cerevisiae GN=RPS25A PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   86 EKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 301
            ++  + V+ DQ  YD++L E P Y+ ++ S+L DRL+I GSLAR A+R L   G+I+ +S H+ Q IYTRAT
Sbjct:   34 DRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAT 105          
The following BLAST results are available for this feature:
BLAST of EH406492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_HUMAN7.398e-2162.5040S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
RS25_BOVIN7.398e-2162.5040S ribosomal protein S25 OS=Bos taurus GN=RPS25 P... [more]
RS25_DANRE9.662e-2162.5040S ribosomal protein S25 OS=Danio rerio GN=rps25 ... [more]
RS25_ICTPU2.811e-2061.1140S ribosomal protein S25 OS=Ictalurus punctatus G... [more]
RS25_DROME2.380e-1962.5040S ribosomal protein S25 OS=Drosophila melanogast... [more]
RS25_SPOFR2.015e-1858.3340S ribosomal protein S25 OS=Spodoptera frugiperda... [more]
RS25_CAEEL2.015e-1858.3340S ribosomal protein S25 OS=Caenorhabditis elegan... [more]
RS25_LEIIN1.035e-1454.2940S ribosomal protein S25 OS=Leishmania infantum G... [more]
RS25_DICDI1.765e-1449.3040S ribosomal protein S25 OS=Dictyostelium discoid... [more]
RS25A_YEAST1.144e-1347.2240S ribosomal protein S25-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CG06FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406492 ID=EH406492; Name=EH406492; organism=Citrus sinensis; type=EST; length=449bp
CAAGGCTCCCCCTCCTTCCTCAAAGCCTGCGAAATCCGGAGGCGGCAAGC
AGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAAGTGAACAAC
ATGGTGTTGTTTGATCAGGCAACCTATGACAAGCTTCTGTCCGAGGCTCC
TAAATACAAGCTTATCACTCCTTCCATTCTCTCCGATCGTCTAAGGATTA
ATGGATCGCTTGCAAGGAAGGCAATAAGAGAGCTTATGGCTAGAGGTTTG
ATCAGGATGGTGTCTGCTCACGCAAGCCAGCAGATTTACACTAGGGCAAC
CAACACCTAAGTCTCTTTTGATATTTGCTTCTTAGTTTATATGTAGTTTC
GTTCTGCCGTGTTTTGACTGCTATTATTTTTGTTTCTTGTGAATCTATTT
GAGAGTGTACAAGTATAATTTAGAGTTTTATTTACATTTCTTGTTTGAT
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