DY257693

Overview
NameDY257693
Unique NameDY257693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257693 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 3
Query:    3 KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 146
            +L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:   69 QLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of DY257693 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 3
Query:    3 KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 146
            +L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:   69 QLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of DY257693 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 3
Query:    3 KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 146
            +L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct:   69 QLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of DY257693 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3
Query:   15 EKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 155
            +KAIF+FV+ N LPP+  ++S+IY+  KDEDGFLY+ YSGENTFGS I
Sbjct:   79 QKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGSDI 126          
The following BLAST results are available for this feature:
BLAST of DY257693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
GBRL2_MOUSE8.919e-1262.50Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN8.919e-1262.50Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN8.919e-1262.50Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8L_DICDI3.389e-1164.58Autophagy-related protein 8-like protein DDB_G0290... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF06FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257693 ID=DY257693; Name=DY257693; organism=Citrus sinensis; type=EST; length=358bp
TCAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTC
CCACCTACAGGTGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGA
AGATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCC
ACATCCCAGTTTAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCT
TGTGCGACCACATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATA
TTCCTTTATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAA
TATGTACAGTTACCTATTGTATATAAGTCTTAAAGGCATAATATGTCAAA
TTTCTTTC
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