CX301088

Overview
NameCX301088
Unique NameCX301088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length254
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YS1_MAIZE (Iron-phytosiderophore transporter yellow stripe 1 OS=Zea mays GN=YS1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.523e-29
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCVVAPLTF LFY AFD+GNP G +KAPY ++YRNMAILGVEGFS LP+HCL L  GFFAFA   ++ RD+ P+K A+++P
Sbjct:  520 TAMGCVVAPLTFLLFYNAFDIGNPTGYWKAPYGLIYRNMAILGVEGFSVLPRHCLALSAGFFAFAFVFSVARDVLPRKYARFVP 603          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL12_ORYSJ (Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAF-DVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCV+AP  F+LFYKAF D+G    EY APYAIVYRNMAILGV+GFS+LP+HCL LCY FFA AIA NL RDL+P K+A++IP
Sbjct:  543 TAMGCVIAPCVFWLFYKAFADIGVSGTEYPAPYAIVYRNMAILGVDGFSSLPKHCLTLCYIFFAAAIAINLARDLAPSKVARFIP 627          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL5_ORYSJ (Probable metal-nicotianamine transporter YSL5 OS=Oryza sativa subsp. japonica GN=YSL5 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.347e-27
Identity = 47/83 (56.63%), Postives = 71/83 (85.54%), Query Frame = 3
Query:    6 AIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            A+GC++APLT +LF+ AFD+G+PDGEYKAP+AI++R MAI+G+EGF+ALP+HCL++C  FF  A+  NL++D+ P  ++++IP
Sbjct:  504 ALGCIIAPLTLWLFWTAFDIGDPDGEYKAPFAIIFREMAIIGIEGFAALPRHCLEICCVFFLAALIINLMKDVVPNHVSRFIP 586          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL14_ORYSJ (Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica GN=YSL14 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.347e-27
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAF-DVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            T +GCV+AP  F+LFYKAF ++G    EY APYAIVYRNMAILGV+GF++LP++CL LCY FFA AIA NL+RDL+P K++++IP
Sbjct:  553 TGMGCVIAPCVFWLFYKAFSNIGTSGTEYPAPYAIVYRNMAILGVDGFNSLPENCLTLCYIFFAAAIAINLIRDLAPHKVSRFIP 637          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL10_ORYSJ (Probable metal-nicotianamine transporter YSL10 OS=Oryza sativa subsp. japonica GN=YSL10 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.123e-26
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAF-DVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCV+AP  F+LFYKAF D+G P  EY +P A+VYRNMAILGV+G  +LP+HCL LC GFF  AIA NL RDL+  K+A+++P
Sbjct:  508 TAMGCVIAPSVFWLFYKAFHDIGMPGSEYPSPNALVYRNMAILGVQGLGSLPKHCLDLCIGFFVAAIAVNLARDLAAPKVARFLP 592          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL11_ORYSJ (Probable metal-nicotianamine transporter YSL11 OS=Oryza sativa subsp. japonica GN=YSL11 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.363e-25
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCV+AP  F+LFYK+F++G  DG Y APY I+YRNMAILGV G S+LP++CL LCY  F  A   NL++DL P+++AK+IP
Sbjct:  539 TAMGCVIAPCVFWLFYKSFNIGASDGAYPAPYTIMYRNMAILGVNGLSSLPKYCLTLCYIAFVAAFIINLIKDLVPERVAKYIP 622          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL7_ARATH (Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.981e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAF-DVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCV++P  F+LFYKAF D G P   Y APYA+VYRNM+ILGVEGFSALP+HCL LCY FFA A+  N +RD    K A++IP
Sbjct:  513 TAMGCVISPCVFWLFYKAFPDFGQPGTAYPAPYALVYRNMSILGVEGFSALPKHCLMLCYIFFAAAVIVNGIRDALGPKWARFIP 597          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL13_ORYSJ (Probable metal-nicotianamine transporter YSL13 OS=Oryza sativa subsp. japonica GN=YSL13 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.773e-23
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFD-VGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCV+AP  F+LFYKAFD +G    +Y AP A V+R++AILGV+GFS+LP++CL LCY FFA AI  NL+RDL P K++++IP
Sbjct:  548 TAMGCVIAPCVFWLFYKAFDNIGISGSDYPAPNAAVFRSIAILGVDGFSSLPKNCLNLCYAFFAAAIVVNLIRDLVP-KVSRFIP 631          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL8_ARATH (Probable metal-nicotianamine transporter YSL8 OS=Arabidopsis thaliana GN=YSL8 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFD-VGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GC+V+P  F+LFYKAFD +G P+ EY AP+A VYR+MA LGVEG S+LP+ CL LCY FF  AI  NL++D    +  +++P
Sbjct:  548 TAMGCLVSPCVFWLFYKAFDDLGLPNSEYPAPFATVYRSMAKLGVEGVSSLPRDCLMLCYVFFGVAILINLIKDCLGNRWGRFVP 632          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL5_ARATH (Probable metal-nicotianamine transporter YSL5 OS=Arabidopsis thaliana GN=YSL5 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.342e-20
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFD-VGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCVV+P  F+LFYKAFD +G P+ EY AP+A VYR+MA LGVEG ++LP+ CL LCY FF  AI  N+++D       ++IP
Sbjct:  538 TAMGCVVSPCVFWLFYKAFDDLGLPNTEYPAPFATVYRSMAKLGVEGVASLPRECLVLCYAFFGVAILVNIVKDSLHSNWGRFIP 622          
The following BLAST results are available for this feature:
BLAST of CX301088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YS1_MAIZE3.523e-2966.67Iron-phytosiderophore transporter yellow stripe 1 ... [more]
YSL12_ORYSJ1.025e-2870.59Probable metal-nicotianamine transporter YSL12 OS=... [more]
YSL5_ORYSJ7.347e-2756.63Probable metal-nicotianamine transporter YSL5 OS=O... [more]
YSL14_ORYSJ7.347e-2764.71Probable metal-nicotianamine transporter YSL14 OS=... [more]
YSL10_ORYSJ8.123e-2662.35Probable metal-nicotianamine transporter YSL10 OS=... [more]
YSL11_ORYSJ2.363e-2559.52Probable metal-nicotianamine transporter YSL11 OS=... [more]
YSL7_ARATH8.981e-2563.53Probable metal-nicotianamine transporter YSL7 OS=A... [more]
YSL13_ORYSJ3.773e-2360.00Probable metal-nicotianamine transporter YSL13 OS=... [more]
YSL8_ARATH4.612e-2155.29Probable metal-nicotianamine transporter YSL8 OS=A... [more]
YSL5_ARATH1.342e-2055.29Probable metal-nicotianamine transporter YSL5 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08005F04SK PhyRootSw1 Citrus sinensis cDNA clone C08005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301088 ID=CX301088; Name=CX301088; organism=Citrus sinensis; type=EST; length=254bp
GGACTGCCATAGGTTGCGTTGTAGCCCCTCTTACATTCTTTCTCTTCTAC
AAGGCTTTTGATGTTGGTAACCCAGATGGTGAATACAAAGCTCCTTATGC
TATCGTCTACCGAAACATGGCAATTCTTGGTGTTGAGGGCTTCTCTGCCC
TGCCTCAGCATTGTTTACAGCTCTGTTATGGGTTTTTTGCCTTTGCCATT
GCGGCAAACTTACTAAGAGATCTTTCTCCTAAGAAAATAGCAAAATGGAT
TCCC
back to top