EY665151

Overview
NameEY665151
Unique NameEY665151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.514e-21
Identity = 88/257 (34.24%), Postives = 117/257 (45.53%), Query Frame = 2
Query:  128 SPTGSSRKGSFVVRAASTPPVKQGADRPLWFASK----------QSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            SP  S   GS  V    T    +G     W+ S           +S SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R    A  G +G+A             D  YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   21 SPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGEAE------------DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.514e-21
Identity = 88/257 (34.24%), Postives = 117/257 (45.53%), Query Frame = 2
Query:  128 SPTGSSRKGSFVVRAASTPPVKQGADRPLWFASK----------QSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            SP  S   GS  V    T    +G     W+ S           +S SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R    A  G +G+A             D  YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   21 SPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGEAE------------DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21
Identity = 84/235 (35.74%), Postives = 111/235 (47.23%), Query Frame = 2
Query:  170 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            AAS      G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y   P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL  D  +  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   55 AASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGEVT------------DPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21
Identity = 81/226 (35.84%), Postives = 111/226 (49.12%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL +D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   53 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21
Identity = 82/225 (36.44%), Postives = 109/225 (48.44%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPV 832
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              D  YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPV
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR----VGGGPLGEGL------------DKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.674e-20
Identity = 81/226 (35.84%), Postives = 110/226 (48.67%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   53 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.674e-20
Identity = 83/243 (34.16%), Postives = 117/243 (48.15%), Query Frame = 2
Query:  146 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            RK +   +  S+     G+DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL +  ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   35 RKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG----GPLGEIV------------DPLYPGGS-FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 84/243 (34.57%), Postives = 116/243 (47.74%), Query Frame = 2
Query:  146 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            RK +   +  S+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                   + LG   DP YPG   F+PLGL +D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   35 RKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVN 252          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 86/256 (33.59%), Postives = 121/256 (47.27%), Query Frame = 2
Query:  128 SPTGSSRKGS--FVVRAASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            SP     +G+  F +R  ++  V  G+     DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   11 SPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.855e-20
Identity = 76/213 (35.68%), Postives = 101/213 (47.42%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAP 799
            G DR  +    S Q+ SYL+G  PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G I PE+L K   +     + WF+ G  I   G  +Y  +P  +           ++ LMG  E  R       G                 G+  YPG   F+PLGL  D  +  +   + +KNGRL M    G+FVQ  VTG  P
Sbjct:   49 GPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE----------------GNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238          
The following BLAST results are available for this feature:
BLAST of EY665151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_ARATH7.514e-2134.24Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH7.514e-2134.24Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2A_PINSY9.813e-2135.74Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_TOBAC9.813e-2135.84Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_TOBAC9.813e-2136.44Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB2A_SPIOL1.674e-2035.84Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT1.674e-2034.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_NICPL2.186e-2034.57Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_CUCSA2.186e-2033.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC2.855e-2035.68Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665151 ID=EY665151; Name=EY665151; organism=Citrus sinensis; type=EST; length=869bp
ATCGTATTGAAGTAGAGAAACAGAGGAAAAAAGAAAATTAAAAATGGCAA
CCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGA
CAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAA
AGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAG
CAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGAT
GGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCC
TGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGG
TCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCG
GAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGATACTGCCCTGGCCTG
GTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAG
ACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAG
CACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGGCAGGCATA
CTTCCTCGGATTCGAGAAATACTTGGGATGATCCGGCGATCCGGCTTACC
CTGGNAGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGANAAGTCA
ATGAAGGATTTCNAAGCTCAGGGAGTGAAGAATGGGAGATTGGNCATGTT
GGGGCATCTGGGGTACTTTGTTCAAGGGTCTGTTACAGGAGTGGCCCCTA
CANAACCTATNGNATCCTNGGCTGATCCTGTAAACACATGTTTTGACTAN
CCTCATTTCACTGAAAGGA
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