EY665151

Overview
NameEY665151
Unique NameEY665151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.855e-20
Identity = 83/235 (35.32%), Postives = 114/235 (48.51%), Query Frame = 2
Query:  170 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            AA++     G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL  D ++  +   + +K GRL ML   G+FVQ  VTG  P        ADPVN
Sbjct:   42 AAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVN 251          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 80/226 (35.40%), Postives = 109/226 (48.23%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   48 GPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 248          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.870e-20
Identity = 82/243 (33.74%), Postives = 115/243 (47.33%), Query Frame = 2
Query:  146 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            RK     + AS+     G DR  +    S ++ SYL G  P DYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL +D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   36 RKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGI--KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.870e-20
Identity = 79/233 (33.91%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  164 VRAASTPPVKQGADRPLWFA----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQDTALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAP 799
            + AA+   +  G D  LW+           S Q+ SYL+G  PGDYG+D  GLS DPE    F   + L   EVI+GR+AMLGA+G + PE+L K  G+  ++    WF+ G  I   G  +Y  +P  +           ++ LMG  E  R       G                 G+  YPG   F+PLGL  D  +  +   + +KNGRL M    G+FVQ  VTG  P
Sbjct:   35 IAAATNGRITMGND--LWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGE----------------GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.870e-20
Identity = 80/226 (35.40%), Postives = 111/226 (49.12%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P         +++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL +D +   +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   50 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.361e-20
Identity = 80/226 (35.40%), Postives = 110/226 (48.67%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG----GPLGEVT------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.361e-20
Identity = 78/215 (36.28%), Postives = 106/215 (49.30%), Query Frame = 2
Query:  224 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                   + LG   DP YPG   F+PLGL +D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   64 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.308e-20
Identity = 81/226 (35.84%), Postives = 110/226 (48.67%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            G+DR  +    S +  SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R    A  G +G+A             D  YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   51 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPELLARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGEGPLGEAE------------DLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.085e-19
Identity = 76/193 (39.38%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  242 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAP 799
            YL+G + GDYG+DP GL   PE        K+ A+ E+I+ R+AMLGA G I PE L K G      A+ WF+TG +   G T NY+    P  L    V E+ L+G AE+ R  +            L FE       D  +PG P F+PLGL KD +       + +KNGRL M   LG+F+Q  VTG  P
Sbjct:   84 YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGP 250          
BLAST of EY665151 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.085e-19
Identity = 79/226 (34.96%), Postives = 109/226 (48.23%), Query Frame = 2
Query:  197 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQDTALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGQAYFLGFEKYLG*SGDPAYPGRPLFNPLGLGKDXKSMKDFXAQGVKNGRLXMLGHLGYFVQGSVTGVAPTXPXXS-XADPVN 835
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+  +     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G+              DP YPG   F+PLGL  D ++  +   + +KNGRL M    G+FVQ  VTG  P        ADPVN
Sbjct:   52 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGV--KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
The following BLAST results are available for this feature:
BLAST of EY665151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_MAIZE2.855e-2035.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE3.729e-2035.40Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_PETSP4.870e-2033.74Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_HORVU4.870e-2033.91Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_APIGR4.870e-2035.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC6.361e-2035.40Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_NICPL6.361e-2036.28Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_SINAL8.308e-2035.84Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB26_ARATH1.085e-1939.38Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB24_PETSP1.085e-1934.96Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665151 ID=EY665151; Name=EY665151; organism=Citrus sinensis; type=EST; length=869bp
ATCGTATTGAAGTAGAGAAACAGAGGAAAAAAGAAAATTAAAAATGGCAA
CCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGA
CAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAA
AGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAG
CAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGAT
GGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCC
TGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGG
TCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCG
GAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGATACTGCCCTGGCCTG
GTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAG
ACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAG
CACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGGCAGGCATA
CTTCCTCGGATTCGAGAAATACTTGGGATGATCCGGCGATCCGGCTTACC
CTGGNAGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGANAAGTCA
ATGAAGGATTTCNAAGCTCAGGGAGTGAAGAATGGGAGATTGGNCATGTT
GGGGCATCTGGGGTACTTTGTTCAAGGGTCTGTTACAGGAGTGGCCCCTA
CANAACCTATNGNATCCTNGGCTGATCCTGTAAACACATGTTTTGACTAN
CCTCATTTCACTGAAAGGA
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