CX043454

Overview
NameCX043454
Unique NameCX043454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNP2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SEE F+   +LMPGGV+SPVRAFKSVGGQPIVF+ V+GS +WD+DGNEYIDY+G+W
Sbjct:   11 SEEIFSAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGSRVWDVDGNEYIDYVGTW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ACAM1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acaryochloris marina (strain MBIC 11017) GN=hemL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.989e-19
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SEE F    +LMPGGV+SPVRAFKSVGGQPIVF+ V+G+H+WD+DGN+YIDY+G+W
Sbjct:   11 SEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGAHVWDVDGNQYIDYVGTW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROMP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.597e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SEE F+   ELMPGGV+SPVRAFKSVGGQPIVF+ V+G + WDIDGN YIDY+GSW
Sbjct:   10 SEEVFSSALELMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDIDGNRYIDYIGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROM5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemL PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.597e-19
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F + +SEE F+   +LMPGGV+SPVRAFKSVGGQPIVF+ V+G   WD+DGN YIDY+GSW
Sbjct:    5 FNITHSEEVFSSALKLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDVDGNRYIDYIGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNY3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechocystis sp. (strain PCC 6803) GN=hemL PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.392e-19
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F    SEE F     LMPGGV+SPVRAFKSVGGQPIVF+ VEG+ +WD+DGN+YIDY+G+W
Sbjct:    7 FITTKSEEIFAAAQHLMPGGVSSPVRAFKSVGGQPIVFDRVEGAQIWDVDGNQYIDYVGTW 67          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROM0 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.392e-19
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            N+T   SEE F+   ELMPGGV+SPVRAFKSVGGQPIVF+ V+G   WDIDGN YIDY+GSW
Sbjct:    6 NYT--KSEEIFSAAQELMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_CYAP8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 8801) GN=hemL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.392e-19
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +F    SEE F    +LMPGGV+SPVRAFKSVGGQPIVF+ V+G+++WD+DGN+YIDY+G+W
Sbjct:    6 SFQTTKSEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDYVGTW 67          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_CYAP7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 7424) GN=hemL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.392e-19
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +F    SEE F    +LMPGGV+SPVRAFKSVGGQPIVF+ VEG+++WD+D N+YIDY+G+W
Sbjct:    6 SFKTTKSEEIFTAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVEGAYIWDVDNNQYIDYVGTW 67          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROM9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SEE F+   ELMPGGV+SPVRAFKSVGGQPIVF+ V+G   WDIDGN YIDY+GSW
Sbjct:   10 SEEIFSAAQELMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_TRIEI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Trichodesmium erythraeum (strain IMS101) GN=hemL PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SEE F    +LMPGGV+SPVRAFKSVGGQPIVF+ V+G+++WD+DGN+YIDY+G+W
Sbjct:   11 SEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVQGAYIWDVDGNQYIDYVGTW 66          
The following BLAST results are available for this feature:
BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
GSA_SYNP21.523e-1973.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_ACAM11.989e-1971.43Glutamate-1-semialdehyde 2,1-aminomutase OS=Acaryo... [more]
GSA_PROMP2.597e-1975.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM52.597e-1967.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNY33.392e-1967.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROM03.392e-1970.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_CYAP83.392e-1964.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_CYAP73.392e-1964.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_PROM94.431e-1975.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_TRIEI7.557e-1969.64Glutamate-1-semialdehyde 2,1-aminomutase OS=Tricho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG
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