CX043454

Overview
NameCX043454
Unique NameCX043454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROMS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain AS9601) GN=hemL PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            N+T   SEE F+   +LMPGGV+SPVRAFKSVGGQPIVF+ V+G   WDIDGN YIDY+GSW
Sbjct:    6 NYT--KSEEIFSAAQQLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_CHLRE (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Chlamydomonas reinhardtii GN=GSA PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  205 KNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            K SEE F    EL+PGGVNSPVRAF+SVGG PIVF+ V+G++ WD+DGN+YIDY+GSW
Sbjct:   40 KRSEEIFKEAQELLPGGVNSPVRAFRSVGGGPIVFDRVKGAYCWDVDGNKYIDYVGSW 97          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNR3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain RCC307) GN=hemL PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+  F    +LMPGGVNSPVRAF+SVGGQPIVF+ VEG++ WD+DGN YIDY+GSW
Sbjct:   12 SDALFTAAQQLMPGGVNSPVRAFRSVGGQPIVFDRVEGAYAWDVDGNRYIDYIGSW 67          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROM2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemL PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SEE F+   +LMPGGV+SPVRAFKSVGGQPIVF+ V+G   WDIDGN YIDY+GSW
Sbjct:   10 SEEIFSAAQQLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_NOSP7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemL PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  193 NFTLKN--SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            N T+K   S+E F     LMPGGV+SPVRAFKSVGGQPIVF+ V+G+++WD+DGN+YIDY+G+W
Sbjct:    3 NTTIKTTKSQEVFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDYVGTW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNS3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9311) GN=hemL PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.289e-18
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            N    +SE  F+    LMPGGV+SPVRAFKSVGGQPIVF+ V+G + WD+DGN+Y+DY+GSW
Sbjct:   10 NLNTSHSEAIFSAAKALMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYVDYIGSW 71          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ANAVT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemL PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.289e-18
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  193 NFTLKN--SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            N T+K   S+E F     LMPGGV+SPVRAFKSVGGQPIVF+ V+G+++WD+DGN+YIDY+G+W
Sbjct:    3 NTTIKTTKSQEIFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ANASP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabaena sp. (strain PCC 7120) GN=hemL PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.289e-18
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  193 NFTLKN--SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            N T+K   S+E F     LMPGGV+SPVRAFKSVGGQPIVF+ V+G+++WD+DGN+YIDY+G+W
Sbjct:    3 NTTIKTTKSQEIFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_CYAA5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain ATCC 51142) GN=hemL PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.199e-18
Identity = 38/56 (67.86%), Postives = 50/56 (89.29%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SE+ F    +LMPGGV+SPVRAFKSVGGQPIVF+ V+G+++WD+DGN+YIDY+G+W
Sbjct:   12 SEDIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTW 67          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_MICAN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Microcystis aeruginosa (strain NIES-843) GN=hemL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.872e-18
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            ++    S+E F    +LMPGGV+SPVRAFKSVGGQPIVFESV+G+++ D+DGNEYIDY+G+W
Sbjct:    6 SYQTTKSKEIFTAAQKLMPGGVSSPVRAFKSVGGQPIVFESVKGAYIRDVDGNEYIDYVGTW 67          
The following BLAST results are available for this feature:
BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
GSA_PROMS7.557e-1969.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_CHLRE7.557e-1968.97Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SYNR39.870e-1969.64Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROM29.870e-1973.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_NOSP79.870e-1964.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc... [more]
GSA_SYNS31.289e-1862.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_ANAVT1.289e-1864.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabae... [more]
GSA_ANASP1.289e-1864.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabae... [more]
GSA_CYAA52.199e-1867.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_MICAN2.872e-1864.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Microc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG
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