CX043454

Overview
NameCX043454
Unique NameCX043454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROMA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus GN=hemL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.398e-18
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F   NS+  F+   ELMPGGV+SPVRAFKSV G PIVF+ V+G++ WD+DGN +IDY+GSW
Sbjct:    5 FNTSNSQAVFHAAQELMPGGVSSPVRAFKSVNGDPIVFDRVKGAYAWDLDGNRFIDYVGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNPW (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain WH7803) GN=hemL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.356e-18
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+E F+    LMPGGV+SPVRAF+SVGGQP+VF+ V+G + WD+DGN+YIDY+GSW
Sbjct:   11 SQELFSAAQALMPGGVSSPVRAFRSVGGQPLVFDRVKGPYAWDVDGNKYIDYIGSW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNJA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hemL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.356e-18
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  190 KNFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            ++F    S + F    +LMPGGV+SPVRAFKSVGG P+VF+ V G++ WD+DGN+YIDY+GSW
Sbjct:    8 RSFNTSRSRQIFARAQQLMPGGVSSPVRAFKSVGGDPVVFDRVAGAYAWDVDGNQYIDYIGSW 70          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNSC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9605) GN=hemL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.091e-17
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1
Query:  208 NSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +S+  F     LMPGGV+SPVRAFKSVGGQPIVF+ V+G + WD+DGN+YIDY+GSW
Sbjct:    5 HSQAIFGAAQALMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNJB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. GN=hemL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +F    S++ F     LMPGGV+SPVRAFKSVGG P+VF+ V G++ WD+DGN+YIDY+GSW
Sbjct:    9 SFNTTRSKQVFARAQSLMPGGVSSPVRAFKSVGGDPVVFDRVSGAYAWDVDGNQYIDYIGSW 70          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROMT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain NATL2A) GN=hemL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  205 KNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            K SEE F     LMPGGV+SPVRAFKSV G PIVF+ V+G + WD+DGN YIDY+GSW
Sbjct:    8 KRSEEIFGAAKNLMPGGVSSPVRAFKSVEGDPIVFDRVKGPYAWDVDGNRYIDYVGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROM1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain NATL1A) GN=hemL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  205 KNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            K SEE F     LMPGGV+SPVRAFKSV G PIVF+ V+G + WD+DGN YIDY+GSW
Sbjct:    4 KRSEEIFGAAKNLMPGGVSSPVRAFKSVEGDPIVFDRVKGPYAWDVDGNRYIDYVGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNS9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9902) GN=hemL PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+  F     LMPGGV+SPVRAFKSVGGQPIVF+ V+G + WD+DGN+YIDY+GSW
Sbjct:    6 SQAIFGAAQGLMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNPX (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain WH8102) GN=hemL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+  F     LMPGGV+SPVRAFKSVGGQPIVF+ V+G + WD+DGN+YIDY+GSW
Sbjct:    6 SQAIFGAAQGLMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNP6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemL PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 3.175e-17
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F    S+E F    +LMPGGV+SPVRAFKSVGGQPIVF+ V+ ++ WD+DGN YIDY+G+W
Sbjct:    7 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTW 67          
The following BLAST results are available for this feature:
BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
GSA_PROMA6.398e-1862.30Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNPW8.356e-1866.07Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNJA8.356e-1858.73Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNSC1.091e-1766.67Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNJB1.425e-1759.68Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROMT1.425e-1767.24Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM11.425e-1767.24Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNS91.861e-1767.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNPX1.861e-1767.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNP63.175e-1762.30Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG
back to top