CX043454

Overview
NameCX043454
Unique NameCX043454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNE7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus elongatus (strain PCC 7942) GN=hemL PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.175e-17
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F    S+E F    +LMPGGV+SPVRAFKSVGGQPIVF+ V+ ++ WD+DGN YIDY+G+W
Sbjct:    7 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTW 67          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROMM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.147e-17
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+  F+    LMPGGV+SPVRAF+SVGGQPIVF+ V+G++ WD+DGN +IDY+GSW
Sbjct:    6 SQAIFSAAQRLMPGGVSSPVRAFRSVGGQPIVFDRVKGAYAWDVDGNRFIDYIGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROM3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.147e-17
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+  F+    LMPGGV+SPVRAF+SVGGQPIVF+ V+G++ WD+DGN +IDY+GSW
Sbjct:    6 SQAIFSAAQRLMPGGVSSPVRAFRSVGGQPIVFDRVKGAYAWDVDGNRFIDYIGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_PROM4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.074e-17
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F    S+  FN   +LMPGGV+SPVRAFKSV G PIVF+ V+G + WD+DGN +IDY+GSW
Sbjct:    5 FNTNLSQAVFNAAQDLMPGGVSSPVRAFKSVNGDPIVFDRVKGPYAWDLDGNRFIDYVGSW 65          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SOLUE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Solibacter usitatus (strain Ellin6076) GN=hemL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  199 TLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            T   SEE F    E +PGGVNSPVRAF+SVGGQP+     +GSH++D+DGNEYIDY+GSW
Sbjct:    2 THTKSEELFRRAVEKIPGGVNSPVRAFRSVGGQPVFIARGQGSHLFDVDGNEYIDYVGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_HALHL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=hemL PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.742e-15
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            ++ + + F    EL+PGGVNSPVRAFK VGG+PI FE  EG +MWD+DG  Y+DY+ SW
Sbjct:    1 MQRTHQLFQQARELIPGGVNSPVRAFKGVGGEPIFFERGEGPYMWDVDGKRYVDYVCSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_THIDA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=hemL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  +E  F  + +++PGGVNSPVRAF+SVGG P+ F    GS +WD DG EYIDY+GSW
Sbjct:    1 MSRNEALFEASQKVIPGGVNSPVRAFRSVGGTPVFFSRARGSRVWDADGREYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_GLOVI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Gloeobacter violaceus GN=hemL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  196 FTLKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            F    S   F    +LMPGGVNSPVRAFKSVG +P+  E  EG+++WD+DGN YI+Y+ +W
Sbjct:    6 FQTAQSHRLFAEAQQLMPGGVNSPVRAFKSVGSEPVFIERAEGAYLWDVDGNRYIEYINTW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ALCBS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  205 KNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            K+SE+ F    + +PGGVNSPVRAFKSVGG P+ F S  G+H++D D N+YIDY+GSW
Sbjct:    4 KHSEQLFRQAQKHIPGGVNSPVRAFKSVGGTPVFFHSARGAHLFDEDDNKYIDYVGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_STRMK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenotrophomonas maltophilia (strain K279a) GN=hemL PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.647e-15
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S   F+   +L+PGGVNSPVRAFKSVGG+P   E  +G++++D+DGN YIDY+GSW
Sbjct:    6 SHALFSRAQQLLPGGVNSPVRAFKSVGGEPFFVERADGAYLYDVDGNRYIDYVGSW 61          
The following BLAST results are available for this feature:
BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
GSA_SYNE73.175e-1762.30Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROMM4.147e-1764.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM34.147e-1764.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM47.074e-1760.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SOLUE1.576e-1663.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Soliba... [more]
GSA_HALHL1.742e-1557.63Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorh... [more]
GSA_THIDA3.881e-1555.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Thioba... [more]
GSA_GLOVI3.881e-1554.10Glutamate-1-semialdehyde 2,1-aminomutase OS=Gloeob... [more]
GSA_ALCBS3.881e-1560.34Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcani... [more]
GSA_STRMK8.647e-1558.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG
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