CX043454

Overview
NameCX043454
Unique NameCX043454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_STRM5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenotrophomonas maltophilia (strain R551-3) GN=hemL PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.647e-15
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S   F+   +L+PGGVNSPVRAFKSVGG+P   E  +G++++D+DGN YIDY+GSW
Sbjct:    6 SHALFSRAQQLLPGGVNSPVRAFKSVGGEPFFVERADGAYLYDVDGNRYIDYVGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_HELMI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=hemL PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.129e-14
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SE+ F     L+PGGVNSPVRAFKSVG  P+  E  EG++++D+DGN+Y+DY+GSW
Sbjct:    8 SEQLFAEAKTLIPGGVNSPVRAFKSVGRNPVFIERAEGAYLYDVDGNKYVDYVGSW 63          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_CHLL2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=hemL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.475e-14
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            L  S E F +  + +PGGVNSPVRAFKSVGG PI     EG++M D+DGN Y+DY+GSW
Sbjct:    4 LTKSAELFELAKKFIPGGVNSPVRAFKSVGGTPIYMAKGEGAYMTDVDGNTYLDYVGSW 62          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_CHLAD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=hemL PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.926e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+  F     ++PGGVNSPVRAF+ VGG PI FE  +G+H+WD+DGN YIDY+ SW
Sbjct:   11 SQANFAAAQAVIPGGVNSPVRAFRGVGGSPIFFERGQGAHIWDVDGNRYIDYVLSW 66          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA2_EXISA (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.926e-14
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S+EAF     LMPGGVNSPVRA+KSVG  PI  E  EGS ++DIDGNEYIDY+ SW
Sbjct:    8 SQEAFEQARPLMPGGVNSPVRAYKSVGMTPIFAERGEGSRVYDIDGNEYIDYVLSW 63          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_DESRM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfotomaculum reducens (strain MI-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  205 KNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            + SEE F     ++PGGVNSPVRAFKSVG  P       GS MWD+DGNEYIDY+ SW
Sbjct:    6 QKSEEMFEQAQRIIPGGVNSPVRAFKSVGMNPPFIARANGSRMWDVDGNEYIDYICSW 63          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA2_BREBN (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  205 KNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            + S + F      +PGGVNSPVRAFKSVGG P+  E  EGS ++D+DGN YIDY+GSW
Sbjct:    4 EKSTQLFAEAQHYIPGGVNSPVRAFKSVGGNPVYIEKGEGSRIFDVDGNSYIDYIGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_XANCP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xanthomonas campestris pv. campestris GN=hemL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S   F+    LMPGGVNSPVRAFKSVGG+P      +G++++D+DGN YIDY+GSW
Sbjct:    6 SHALFSQAQNLMPGGVNSPVRAFKSVGGEPFFVARADGAYLFDVDGNRYIDYVGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_XANCB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xanthomonas campestris pv. campestris (strain B100) GN=hemL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S   F+    LMPGGVNSPVRAFKSVGG+P      +G++++D+DGN YIDY+GSW
Sbjct:    6 SHALFSQAQNLMPGGVNSPVRAFKSVGGEPFFVARADGAYLFDVDGNRYIDYVGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_XANC8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hemL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            S   F+    LMPGGVNSPVRAFKSVGG+P      +G++++D+DGN YIDY+GSW
Sbjct:    6 SHALFSQAQNLMPGGVNSPVRAFKSVGGEPFFVARADGAYLFDVDGNRYIDYVGSW 61          
The following BLAST results are available for this feature:
BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
GSA_STRM58.647e-1558.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenot... [more]
GSA_HELMI1.129e-1458.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Heliob... [more]
GSA_CHLL21.475e-1459.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_CHLAD1.926e-1458.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA2_EXISA1.926e-1467.86Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exig... [more]
GSA_DESRM2.516e-1460.34Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA2_BREBN2.516e-1458.62Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Brev... [more]
GSA_XANCP3.286e-1458.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Xantho... [more]
GSA_XANCB3.286e-1458.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Xantho... [more]
GSA_XANC83.286e-1458.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Xantho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG
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