CX043454

Overview
NameCX043454
Unique NameCX043454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SHIBS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella boydii serotype 4 (strain Sb227) GN=hemL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SHIB3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hemL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SYNAS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntrophus aciditrophicus (strain SB) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            SE+ F     L+PGGVNSPVRAF++VGG P   +  EGS ++DIDG EYIDY+GSW
Sbjct:    6 SEQLFETAEGLLPGGVNSPVRAFRAVGGVPRFIDRAEGSRIYDIDGREYIDYVGSW 61          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SHISS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella sonnei (strain Ss046) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SHIFL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella flexneri GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SHIF8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella flexneri serotype 5b (strain 8401) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SALTY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella typhimurium GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SALTI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella typhi GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SALSV (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella schwarzengrund (strain CVM19633) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_SALPK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella paratyphi A (strain AKU_12601) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59          
The following BLAST results are available for this feature:
BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
GSA_SHIBS3.286e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SHIB33.286e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SYNAS4.291e-1460.71Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntro... [more]
GSA_SHISS4.291e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SHIFL4.291e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SHIF84.291e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SALTY4.291e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALTI4.291e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALSV4.291e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALPK4.291e-1452.54Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG
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