CX043454 | Citrus Genome Database

Overview


Name	CX043454
Unique Name	CX043454
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	378

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_NITEU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitrosomonas europaea GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 1

Query:  211 SEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +++ F  + + +PGGVNSPVRAFKSVGG P+ F+  +G++ WD++G  YIDY+GSW
Sbjct:    5 NQQLFERSRQYIPGGVNSPVRAFKSVGGTPVFFQRGQGAYFWDVEGKSYIDYVGSW 60

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_IDILO (Glutamate-1-semialdehyde 2,1-aminomutase OS=Idiomarina loihiensis GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SEE +      +PGGVNSPVRAF  VGG PI FES EG++M D DG  YIDY+GSW
Sbjct:    1 MSRSEELYTKAQISIPGGVNSPVRAFNGVGGSPIFFESAEGAYMIDADGKRYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ESCF3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ECOUT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain UTI89 / UPEC) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ECOSM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ECOSE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain SE11) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ECOLU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ECOLI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain K12) GN=hemL PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ECOLC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

[Close]

BLAST of CX043454 vs. ExPASy Swiss-Prot
Match: GSA_ECOL6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia coli O6 GN=hemL PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  202 LKNSEEAFNVT*ELMPGGVNSPVRAFKSVGGQPIVFESVEGSHMWDIDGNEYIDYLGSW 378
            +  SE  ++   EL+PGGVNSPVRAF  VGG P+  E  +G++++D+DG  YIDY+GSW
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSW 59

The following BLAST results are available for this feature:

BLAST of CX043454 vs. ExPASy Swiss-Prot

BLAST of CX043454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422


Match Name	E-value	Identity	Description
GSA_NITEU	4.291e-14	53.57	Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitros...	[more]
GSA_IDILO	4.291e-14	59.32	Glutamate-1-semialdehyde 2,1-aminomutase OS=Idioma...	[more]
GSA_ESCF3	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]
GSA_ECOUT	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]
GSA_ECOSM	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]
GSA_ECOSE	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]
GSA_ECOLU	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]
GSA_ECOLI	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]
GSA_ECOLC	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]
GSA_ECOL6	4.291e-14	52.54	Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_11B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B08-C15-1-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX043454 ID=CX043454; Name=CX043454; organism=Citrus sinensis; type=EST; length=378bp
TATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAGAGAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTGCTGGATCCTCTCGC
TGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAAAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCACCTAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAGCCT
ATTGTGTTTGAATCCGTCGAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATCTAGGTTCTTGG