EY665145

Overview
NameEY665145
Unique NameEY665145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_CLOD6 (GTP-binding protein era homolog OS=Clostridium difficile (strain 630) GN=era PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  386 KSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDAW*APERIDDISHYGVGDHKI 721
            KSG+V+++ +PNVGKS+L N ++G++++I+++KPQTT + I  + +  + Q++  DTPGI + K + L   M+K    A  N D I  +V         DD    G GD KI
Sbjct:    3 KSGFVSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK-NKLGEFMVKAATEAFKNVDLILFVV---------DDSKKIGPGDRKI 104          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_ALKOO (GTP-binding protein era homolog OS=Alkaliphilus oremlandii (strain OhILAs) GN=era PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 37/91 (40.66%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  386 KSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVD 658
            KSG+V ++ +PNVGKS+L N++IG++++I+++KPQTT ++I  + +  DYQ++  DTPGI + K H L   M+K         D +  +VD
Sbjct:    4 KSGFVTIIGRPNVGKSTLMNKIIGEKIAIMSDKPQTTRNKIQCVYTQKDYQIVFLDTPGIHKPK-HKLGQYMVKIATETLKEVDAVLFVVD 93          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_RICAH (GTP-binding protein era homolog OS=Rickettsia akari (strain Hartford) GN=era PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  380 NHKSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDAW*APERIDDISH 697
            N ++  V ++ +PN GKS+L N++IG++LSIVT K QTT   I GI +  D Q+ILYDTPGI E K   L+  M++   S+  +AD +  ++D+    +  DD++H
Sbjct:    3 NQRTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK-GSLEKAMVRCAWSSLHSADLVMLIIDSL---KPFDDVTH 104          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_NITEU (GTP-binding protein era homolog OS=Nitrosomonas europaea GN=era PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  377 PNHKSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDA 661
            P +K+GY++++ +PNVGKS+L N +I Q++SI + K QTT HRI GI +    Q I  DTPG   +    L+ +M + V  +  + D +  +V+A
Sbjct:    4 PGYKTGYISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDAQSQFIFVDTPGFQTRHRSQLNQVMNRVVLQSMQDVDVVVFVVEA 98          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_LACCB (GTP-binding protein era homolog OS=Lactobacillus casei (strain BL23) GN=era PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  383 HKSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDA 661
            H SG+VA++ +PNVGKS+  N+++G++++I++ K QTT ++I GI + PD Q++  DTPGI + K + LD+ M K   S     D I  +V+A
Sbjct:    4 HHSGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK-NELDTYMDKAALSTLNQVDAILFMVEA 95          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_LACC3 (GTP-binding protein era homolog OS=Lactobacillus casei (strain ATCC 334) GN=era PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  383 HKSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDA 661
            H SG+VA++ +PNVGKS+  N+++G++++I++ K QTT ++I GI + PD Q++  DTPGI + K + LD+ M K   S     D I  +V+A
Sbjct:    4 HHSGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPK-NELDTYMDKAALSTLNQVDAILFMVEA 95          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_CYAP8 (GTP-binding protein era homolog OS=Cyanothece sp. (strain PCC 8801) GN=era PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  386 KSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDA 661
            KSG+V ++ +PNVGKS+L NQ++GQ+++I +   QTT +R+ GI +  + Q+I  DTPG I K  H L  ++++N  +A    D I  +VD+
Sbjct:   21 KSGFVGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPG-IHKPHHQLGKILVQNAEAAINAVDIILVVVDS 111          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_BACSU (GTP-binding protein era homolog OS=Bacillus subtilis GN=era PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  371 SHPNHKSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDA 661
            ++ + KSG+V+++ +PNVGKS+  N++IGQ+++I+++KPQTT +++ G+ +    Q I  DTPGI + K H L   MMK  ++     D I  +++A
Sbjct:    2 TNESFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK-HKLGDFMMKVAQNTLKEVDLILFMINA 97          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_SYNAS (GTP-binding protein era homolog OS=Syntrophus aciditrophicus (strain SB) GN=era PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 36/92 (39.13%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  386 KSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDA 661
            KSG++ ++ +PNVGKS+L N ++G++L+I+T+KPQTT +RI+GI +  + Q I  DTPG I      L+ +M++       ++D +  +V+A
Sbjct:   14 KSGFIGIIGRPNVGKSTLLNGILGEKLAIITHKPQTTRNRIMGIRNADNAQFIFVDTPG-IHSASTPLNRLMVRTATETFTDSDILLLVVEA 104          
BLAST of EY665145 vs. ExPASy Swiss-Prot
Match: ERA_RHILO (GTP-binding protein era homolog OS=Rhizobium loti GN=era PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  368 ASHPNHKSGYVAVLWKPNVGKSSLANQMIGQQLSIVTNKPQTTGHRILGICSGPDYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIAALVDA 661
            A  P   SG+VA++  PN GKS+L NQ++G ++SIVT+K QTT   + GI +  + Q++  DTPGI + K   LD+ M+        +AD +  L+DA
Sbjct:   11 AETPATHSGFVALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIATHDNAQIVFVDTPGIFKPK-RRLDTAMVTTAWGGAKDADIVLLLIDA 107          
The following BLAST results are available for this feature:
BLAST of EY665145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
ERA_CLOD63.263e-1337.50GTP-binding protein era homolog OS=Clostridium dif... [more]
ERA_ALKOO3.263e-1340.66GTP-binding protein era homolog OS=Alkaliphilus or... [more]
ERA_RICAH4.262e-1341.51GTP-binding protein era homolog OS=Rickettsia akar... [more]
ERA_NITEU4.262e-1338.95GTP-binding protein era homolog OS=Nitrosomonas eu... [more]
ERA_LACCB4.262e-1341.94GTP-binding protein era homolog OS=Lactobacillus c... [more]
ERA_LACC34.262e-1341.94GTP-binding protein era homolog OS=Lactobacillus c... [more]
ERA_CYAP84.262e-1341.30GTP-binding protein era homolog OS=Cyanothece sp. ... [more]
ERA_BACSU4.262e-1338.14GTP-binding protein era homolog OS=Bacillus subtil... [more]
ERA_SYNAS5.567e-1339.13GTP-binding protein era homolog OS=Syntrophus acid... [more]
ERA_RHILO5.567e-1340.82GTP-binding protein era homolog OS=Rhizobium loti ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665145 ID=EY665145; Name=EY665145; organism=Citrus sinensis; type=EST; length=851bp
CTCGGNAGCAGGCGAATGAAATCAACATGAAAGCAAAGCTCCGATAATGG
AGCTAGGTGTACACATATCCTCTTCTTTTGGCAGTCTGTTCCCTCATTAC
AGCACATTAACAGCATATAGAGAAATTAAATTTGGGTTCCAAGGCAGAAG
TACTACTATCACTTGTAAAAGCAATGAACACCAAAGCCTTGTATTGTCAG
AGAAAGAAGTACAGCTACAAAAGCTTTGGAGTAACCAACGGGAAATGGAC
TTAAACGATGGTGATGAAATGGAATTTGACGATGCATCGTCGTTTCTATC
TCTGTCTGAAAAACCAGACAGGAATATGGCTTCGCCGGACGACTACGAGA
TTGAATAATTTGACTACGCCTCTCATCCAAATCACAAAAGCGGATATGTG
GCAGTACTATGGAAGCCAAATGTGGGGAAAAGTTCTCTCGCAAACCAAAT
GATCGGTCAACAGCTCTCAATTGTTACAAATAAGCCCCAAACTACGGGGC
ACCGTATTCTTGGTATCTGCTCTGGTCCAGATTATCAGATGATACTTTAT
GATACCCCTGGCATAATTGAGAAGAAAATTCACATGTTGGACTCTATGAT
GATGAAGAATGTCCGCAGTGCTGGGATTAACGCTGACTGTATTGCTGCTC
TCGTTGATGCTTGGTAAGCTCCTGAAAGAATTGATGACATTTCGCACTAC
GGAGTGGGAGACCACAAGATAAATTGCCTATATTGTCCGTACTGAATAAC
ATGATCTGATCAGCCGTGGTGAAATCGCTAAAAGCTTGAGTGCATGAGAA
ATTACAGATGTGATGAGGTATACCCGTGACGCAAATATGCCATGGAGTGG
A
back to top