CX300924

Overview
NameCX300924
Unique NameCX300924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF24_ARATH (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3
Query:   18 EQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            E AL CPRC STNTKFCY+NNYSLTQPR+FCKTCRRYWT GG+LRN+PVGGG
Sbjct:   86 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGG 137          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.326e-23
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 3
Query:    6 RPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            RP  +    CPRC ST+TKFCYYNNYSL+QPRYFCKTCRRYWT+GG+LRNIPVGGG
Sbjct:   66 RPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGG 121          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF57_ARATH (Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.954e-23
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 3
Query:   12 QKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            Q +Q L CPRCNS NTKFCYYNNYSL+QPR+FCK+CRRYWT GG+LRN+P+GGG
Sbjct:   36 QDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGG 89          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF51_ARATH (Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.858e-23
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 3
Query:    9 PQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            P  E AL CPRC+STNTKFCY+NNYSLTQPR+FCK CRRYWT GG+LR++PVGGG
Sbjct:   89 PLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGG 143          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.594e-23
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    3 ARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            A    E   +CPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWT+GGSLRN+PVGGG
Sbjct:   17 ANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGG 73          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.466e-22
Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   21 QALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGXXXXXXXXXXXXXLPDPATPPS-----HHPHQNPKIHDHGQDLNLAFPAATTQGYRSIS 335
            Q+L CPRCNS NTKFCYYNNY+L+QPR+FCK CRRYWT+GG LRN+PVGGG                 A  P+     HH  +      H    + +  A+ +    ++S
Sbjct:   49 QSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSSADKPTTTQDDHHVEEKSSTGSHSSSESSSLTASNSTTVAAVS 158          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.914e-22
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 3
Query:    9 PQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            P++EQ L CPRC+S NTKFCYYNNY+L+QPR+FCK CRRYWT+GG+LRNIPVGGG
Sbjct:   28 PEQEQ-LKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGG 81          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF22_ARATH (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.266e-22
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 3
Query:   18 EQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            E AL CPRC+S NTKFCY+NNY+LTQPR+FCK CRRYWT GG+LRN+PVGGG
Sbjct:   91 EGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGG 142          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF16_ARATH (Dof zinc finger protein DOF1.6 OS=Arabidopsis thaliana GN=DOF1.6 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.265e-22
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 3
Query:    9 PQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            P   + L CPRCNST TKFCYYNNY+L QPRY+CK+CRRYWT+GG+LR++PVGGG
Sbjct:   23 PNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCRRYWTQGGTLRDVPVGGG 77          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF31_ARATH (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.570e-22
Identity = 39/53 (73.58%), Postives = 50/53 (94.34%), Query Frame = 3
Query:   15 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            +++ L CPRC+S NTKFCYYNNY+L+QPR+FCK+CRRYWT+GG+LRN+PVGGG
Sbjct:   25 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGG 77          
The following BLAST results are available for this feature:
BLAST of CX300924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF24_ARATH1.015e-2384.62Dof zinc finger protein DOF2.4 OS=Arabidopsis thal... [more]
DOF56_ARATH1.326e-2378.57Dof zinc finger protein DOF5.6 OS=Arabidopsis thal... [more]
DOF57_ARATH2.954e-2377.78Dof zinc finger protein DOF5.7 OS=Arabidopsis thal... [more]
DOF51_ARATH3.858e-2378.18Dof zinc finger protein DOF5.1 OS=Arabidopsis thal... [more]
DOF35_ARATH8.594e-2377.19Dof zinc finger protein DOF3.5 OS=Arabidopsis thal... [more]
DOF54_ARATH1.466e-2243.64Dof zinc finger protein DOF5.4 OS=Arabidopsis thal... [more]
DOF17_ARATH1.914e-2278.18Dof zinc finger protein DOF1.7 OS=Arabidopsis thal... [more]
DOF22_ARATH3.266e-2278.85Dof zinc finger protein DOF2.2 OS=Arabidopsis thal... [more]
DOF16_ARATH4.265e-2272.73Dof zinc finger protein DOF1.6 OS=Arabidopsis thal... [more]
DOF31_ARATH5.570e-2273.58Dof zinc finger protein DOF3.1 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC08003G05SK PhyRootSw1 Citrus sinensis cDNA clone C08003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300924 ID=CX300924; Name=CX300924; organism=Citrus sinensis; type=EST; length=383bp
AAGCAAGGCCCCAAAAGGAACAAGCTTTGAACTGCCCAAGGTGCAATTCA
ACTAACACAAAGTTTTGTTACTACAACAATTATAGTCTCACTCAGCCTAG
GTATTTTTGCAAGACTTGTAGAAGGTACTGGACTGAGGGTGGGTCTTTGA
GAAACATTCCTGTAGGTGGTGGTTCAAGGAAGAACAAAAGATCTTCATCA
TCTTCTAAAAAGCTTCCTGATCCTGCTACACCACCAAGTCATCATCCTCA
TCAAAACCCTAAGATCCATGATCATGGCCAAGATCTTAACCTGGCTTTCC
CAGCTGCCACTACTCAAGGTTATAGGAGCATCTCTGAACTGGTTCAACTA
CCCAATATTGACAACAAGAGCCAAATTCCAATA
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