CX300924

Overview
NameCX300924
Unique NameCX300924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.570e-22
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 3
Query:   33 CPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWT+GGSLRNIPVGGG
Sbjct:   40 CPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGG 86          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.570e-22
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 3
Query:   27 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            L CPRC+S+NTKFCYYNNY+LTQPR+FCK CRRYWT+GG+LRN+PVGGG
Sbjct:   77 LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGG 125          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF14_ARATH (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.117e-21
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 3
Query:    6 RPQKEQA-LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGG 170
            +PQ+ Q  L CPRC+S+NTKFCYYNNYSL+QPR+FCK C+RYWT GG+LRN+PVGG
Sbjct:   19 QPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGG 74          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF47_ARATH (Dof zinc finger protein DOF4.7 OS=Arabidopsis thaliana GN=DOF4.7 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.764e-21
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 3
Query:    9 PQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGG 170
            P  +  L CPRC+S NTKFCYYNNYSL+QPR++CK CRRYWT GG+LRN+P+GG
Sbjct:   35 PATQPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVPIGG 88          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF58_ARATH (Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.159e-21
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 3
Query:   15 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGG 170
            +++ L+CPRC STNTKFCYYNNY+ +QPR+FCK+CRRYWT GG+LR+IPVGG
Sbjct:   28 QQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGG 79          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF34_ARATH (Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana GN=DOF3.4 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 37/53 (69.81%), Postives = 48/53 (90.57%), Query Frame = 3
Query:   15 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            +++ L CPRC+S+NTKFCYYNNY+ +QPR+FCK CRRYWT GG+LR++PVGGG
Sbjct:   26 QQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGG 78          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF44_ARATH (Dof zinc finger protein DOF4.4 OS=Arabidopsis thaliana GN=DOF4.4 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.809e-20
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3
Query:   33 CPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGG 170
            CPRC+S NTKFC+YNNYS +QPRYFCK CRRYWT GG+LRNIPVGG
Sbjct:   26 CPRCDSDNTKFCFYNNYSESQPRYFCKNCRRYWTHGGALRNIPVGG 71          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF1A_ARATH (Dof zinc finger protein DOF1.10 OS=Arabidopsis thaliana GN=DOF1.10 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.893e-20
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    3 ARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            A  + ++ + CPRC S NTKFCYYNNY++ QPRYFC+ C+RYWT GGS+RN+PVG G
Sbjct:  124 ALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSG 180          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: MNB1A_MAIZE (Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 3
Query:   33 CPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            CPRC S +TKFCYYNNY+ +QPR+FCK CRRYWT+GG+LRN+PVGGG
Sbjct:   49 CPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGG 95          
BLAST of CX300924 vs. ExPASy Swiss-Prot
Match: DOF52_ARATH (Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.414e-19
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   18 EQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGG 173
            ++ L CPRCNS  TKFCYYNNY++ QPR+FCK C+RYWT GG++RN+PVG G
Sbjct:  135 DKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAG 186          
The following BLAST results are available for this feature:
BLAST of CX300924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF12_ARATH5.570e-2289.36Dof zinc finger protein DOF1.2 OS=Arabidopsis thal... [more]
DOF11_ARATH5.570e-2281.63Dof zinc finger protein DOF1.1 OS=Arabidopsis thal... [more]
DOF14_ARATH2.117e-2173.21Dof zinc finger protein DOF1.4 OS=Arabidopsis thal... [more]
DOF47_ARATH2.764e-2170.37Dof zinc finger protein DOF4.7 OS=Arabidopsis thal... [more]
DOF58_ARATH6.159e-2173.08Dof zinc finger protein DOF5.8 OS=Arabidopsis thal... [more]
DOF34_ARATH1.051e-2069.81Dof zinc finger protein DOF3.4 OS=Arabidopsis thal... [more]
DOF44_ARATH6.809e-2082.61Dof zinc finger protein DOF4.4 OS=Arabidopsis thal... [more]
DOF1A_ARATH8.893e-2063.16Dof zinc finger protein DOF1.10 OS=Arabidopsis tha... [more]
MNB1A_MAIZE3.379e-1976.60Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A... [more]
DOF52_ARATH4.414e-1967.31Dof zinc finger protein DOF5.2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC08003G05SK PhyRootSw1 Citrus sinensis cDNA clone C08003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300924 ID=CX300924; Name=CX300924; organism=Citrus sinensis; type=EST; length=383bp
AAGCAAGGCCCCAAAAGGAACAAGCTTTGAACTGCCCAAGGTGCAATTCA
ACTAACACAAAGTTTTGTTACTACAACAATTATAGTCTCACTCAGCCTAG
GTATTTTTGCAAGACTTGTAGAAGGTACTGGACTGAGGGTGGGTCTTTGA
GAAACATTCCTGTAGGTGGTGGTTCAAGGAAGAACAAAAGATCTTCATCA
TCTTCTAAAAAGCTTCCTGATCCTGCTACACCACCAAGTCATCATCCTCA
TCAAAACCCTAAGATCCATGATCATGGCCAAGATCTTAACCTGGCTTTCC
CAGCTGCCACTACTCAAGGTTATAGGAGCATCTCTGAACTGGTTCAACTA
CCCAATATTGACAACAAGAGCCAAATTCCAATA
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