CX300923

Overview
NameCX300923
Unique NameCX300923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS----AVQRPRSRTLTAVH 387
            +T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLT+VH
Sbjct:    3 STSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            ++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLTAVH
Sbjct:    3 SSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            ++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLTAVH
Sbjct:    3 SSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            ++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLTAVH
Sbjct:    3 SSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            ++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLTAVH
Sbjct:    3 SSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            ++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLTAVH
Sbjct:    3 SSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            +T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V   RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLTAVH
Sbjct:    3 STSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGAGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_DICDI (40S ribosomal protein S7 OS=Dictyostelium discoideum GN=rps7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.111e-25
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   34 KKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV---QRPRSRTLTAVH 387
            KKI K      TEFE TVAQAL DLEN N ELK DLKDL +    ++DV+ ++KA+V++VP+R  K Y KI  +L  E+EKK  GK V+ IA RRI+R P   + +   +RP SRT+ AVH
Sbjct:    4 KKIIKPAGKVATEFENTVAQALVDLENNNAELK-DLKDLSVCSVKEVDVAESKKAVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRTIKAVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_SCHPO (40S ribosomal protein S7 OS=Schizosaccharomyces pombe GN=rps7 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.190e-24
Identity = 59/119 (49.58%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV--QRPRSRTLTAVH 387
            KI K   ++PTE +  VAQ L+DLE++++++  +L+ L I  A +++V G +KAIVV+VP  L KA+ K  +RL RELEKKF+ + V+ IA RRI+  P + S V  +RPRSRTLTAVH
Sbjct:    6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVTQKRPRSRTLTAVH 124          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_ANOGA (40S ribosomal protein S7 OS=Anopheles gambiae GN=RpS7 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.030e-24
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVH 387
            K+ K  + EP  FE  + QA+ +LE  N +LK  L+DLYI +A +++ + N+KAI++YVP   +KA++K+ +RLVRELEKKFSGK VV IA RRI+  P +G    +  +RPRSRTLTAV+
Sbjct:    6 KVIKAGNGEPDAFETQIGQAILELE-MNSDLKPQLRDLYITRAREVEFN-NKKAIIIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSRTLTAVY 124          
The following BLAST results are available for this feature:
BLAST of CX300923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_TAKRU5.341e-2550.4040S ribosomal protein S7 OS=Takifugu rubripes GN=r... [more]
RS7_RAT5.341e-2550.4040S ribosomal protein S7 OS=Rattus norvegicus GN=R... [more]
RS7_MOUSE5.341e-2550.4040S ribosomal protein S7 OS=Mus musculus GN=Rps7 P... [more]
RS7_HUMAN5.341e-2550.4040S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
RS7_FELCA5.341e-2550.4040S ribosomal protein S7 OS=Felis catus GN=RPS7 PE... [more]
RS7_BOVIN5.341e-2550.4040S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=... [more]
RS7_XENLA9.111e-2550.4040S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_DICDI9.111e-2551.2440S ribosomal protein S7 OS=Dictyostelium discoide... [more]
RS7_SCHPO1.190e-2449.5840S ribosomal protein S7 OS=Schizosaccharomyces po... [more]
RS7_ANOGA2.030e-2450.4140S ribosomal protein S7 OS=Anopheles gambiae GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC08003G04SK PhyRootSw1 Citrus sinensis cDNA clone C08003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300923 ID=CX300923; Name=CX300923; organism=Citrus sinensis; type=EST; length=388bp
CTCGTGCCGAATTCGGCACGAGGCACGACTAAGAAGAAAATCCAAAAAGA
CAAGGATGCCGAACCTACTGAGTTTGAGGAGACAGTTGCCCAGGCACTGT
TTGATTTGGAGAATACCAACCAGGAGCTTAAAAGTGACTTGAAAGATCTT
TACATTAATCAAGCCATTCAAATGGATGTTTCTGGAAACCGCAAGGCAAT
TGTTGTCTATGTGCCTTACAGATTGAGGAAGGCTTATCGGAAGATTCATT
CTCGCCTTGTGAGAGAGCTGGAGAAGAAATTCAGTGGCAAGGATGTTGTA
CTCATTGCCACCCGAAGGATAGTCAGGCCACCAAAGAAAGGCTCTGCTGT
TCAGAGACCTCGCAGTCGCACACTCACAGCTGTTCATG
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