CX300923

Overview
NameCX300923
Unique NameCX300923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_CULQU (40S ribosomal protein S7 OS=Culex quinquefasciatus GN=RpS7 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVH 387
            K+ K   AEP  FE  + QA+ +LE  N +LK  L+DL+I +A +++ + N+KAIV+YVP   +KA++K+ +RLVRELEKKFSGK VV I  RRI+  P++G    +  +RPRSRTLTAV+
Sbjct:    6 KVIKSGGAEPDAFEGQIGQAILELE-MNSDLKPQLRDLHITRAREIEFN-NKKAIVIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIGERRILPKPQRGRRDPNKQKRPRSRTLTAVY 124          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_CAEEL (40S ribosomal protein S7 OS=Caenorhabditis elegans GN=rps-7 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24
Identity = 60/122 (49.18%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV-----QRPRSRTLTAVH 387
            K+ K      +E E+ V+QAL DLE TN +++S LK+LYI    ++++ GN+ AI++YVP    KA+ KIH  LVRELEKKF G+D++++A RRI+  P++GS       +RPRSRTLTAVH
Sbjct:    7 KLLKSDGKVVSEIEKQVSQALIDLE-TNDDVQSQLKELYIVGVKEVEL-GNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_SPOFR (40S ribosomal protein S7 OS=Spodoptera frugiperda GN=RpS7 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            KI K   AEP  FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+
Sbjct:    4 KIIKASAAEPDVFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 122          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_MANSE (40S ribosomal protein S7 OS=Manduca sexta GN=RpS7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.527e-22
Identity = 59/121 (48.76%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            KI K    E   FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+
Sbjct:    4 KILKAGGTEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 122          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_DROME (40S ribosomal protein S7 OS=Drosophila melanogaster GN=RpS7 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.219e-22
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS----AVQRPRSRTLTAVH 387
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+IA R+I+  P + +      +RPRSRTLTAV+
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVY 124          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7B_YEAST (40S ribosomal protein S7-B OS=Saccharomyces cerevisiae GN=RPS7B PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 52/110 (47.27%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   64 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVH 387
            P+E E  VA+   DLE+++ ELK+DL+ L I    ++DV+G +KA+V++VP     AY K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVH
Sbjct:   13 PSELELQVAKTFIDLESSSPELKADLRPLQIKSIREIDVTGGKKALVLFVPVPALSAYHKVQTKLTRELEKKFPDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVH 122          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_DROYA (40S ribosomal protein S7 OS=Drosophila yakuba GN=RpS7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21
Identity = 57/121 (47.11%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   37 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS----AVQRPRSRTLTAVH 387
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+I  R+I+  P + +      +RPRSRTLTAV+
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVY 124          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7A_YEAST (40S ribosomal protein S7-A OS=Saccharomyces cerevisiae GN=RPS7A PE=1 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 7.981e-21
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   64 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVH 387
            PTE E  VAQA  +LEN++ ELK++L+ L      ++DV+G +KA+ ++VP      + K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVH
Sbjct:   13 PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVH 122          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.961e-20
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   64 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS------AVQRPRSRTLTAVH 387
            P+E E  VA AL+DLE+   +LK+ L+ L    A +++V   +KAIV++VP    + + ++  RL RELEKKFS + V+++A+RRI+  PK+ S        +RPRSRTLTAVH
Sbjct:   19 PSELETAVAGALYDLESNTADLKAALRPLQFVSAREIEVGHGKKAIVIFVPVPSLQGFHRVQQRLTRELEKKFSDRHVLIVASRRILPRPKRSSRSRNTLKQKRPRSRTLTAVH 132          
The following BLAST results are available for this feature:
BLAST of CX300923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_CULQU4.522e-2450.4140S ribosomal protein S7 OS=Culex quinquefasciatus... [more]
RS7_CAEEL5.905e-2449.1840S ribosomal protein S7 OS=Caenorhabditis elegans... [more]
RS7_SPOFR3.828e-2350.4140S ribosomal protein S7 OS=Spodoptera frugiperda ... [more]
RS7_MANSE5.527e-2248.7640S ribosomal protein S7 OS=Manduca sexta GN=RpS7 ... [more]
RS7_DROME7.219e-2247.9340S ribosomal protein S7 OS=Drosophila melanogaste... [more]
RS7B_YEAST1.231e-2147.2740S ribosomal protein S7-B OS=Saccharomyces cerevi... [more]
RS7_DROYA2.100e-2147.1140S ribosomal protein S7 OS=Drosophila yakuba GN=R... [more]
RS7A_YEAST7.981e-2145.4540S ribosomal protein S7-A OS=Saccharomyces cerevi... [more]
RS7_NEUCR3.961e-2044.7440S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC08003G04SK PhyRootSw1 Citrus sinensis cDNA clone C08003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300923 ID=CX300923; Name=CX300923; organism=Citrus sinensis; type=EST; length=388bp
CTCGTGCCGAATTCGGCACGAGGCACGACTAAGAAGAAAATCCAAAAAGA
CAAGGATGCCGAACCTACTGAGTTTGAGGAGACAGTTGCCCAGGCACTGT
TTGATTTGGAGAATACCAACCAGGAGCTTAAAAGTGACTTGAAAGATCTT
TACATTAATCAAGCCATTCAAATGGATGTTTCTGGAAACCGCAAGGCAAT
TGTTGTCTATGTGCCTTACAGATTGAGGAAGGCTTATCGGAAGATTCATT
CTCGCCTTGTGAGAGAGCTGGAGAAGAAATTCAGTGGCAAGGATGTTGTA
CTCATTGCCACCCGAAGGATAGTCAGGCCACCAAAGAAAGGCTCTGCTGT
TCAGAGACCTCGCAGTCGCACACTCACAGCTGTTCATG
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