EH406453

Overview
NameEH406453
Unique NameEH406453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 228
            VVEAK G GSATLSM  AAA+F  + +R L+G+ G++EC YV        FFA  V LG+ G+EE+ + G L+E+E
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEEGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFE 288          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AA +F  A ++ L+G++ V+E AYV       PFFA  ++LG+ G+E +  +G L+ YE+A L+
Sbjct:  213 VVEAKAGGGSATLSMGQAACRFGLALVKALQGESDVVEYAYVEGEGEYAPFFAQPIKLGKNGVEALLDIGKLSAYEQAALD 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ GIEE   +G L+ YE+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGEYARFFSQPLLLGKNGIEERKPIGTLSAYEQQALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_ECOL5 (Malate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GVIECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVIECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_ECO7I (Malate dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_AERS4 (Malate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AA +F  + ++GL+G+A VIECAYV        FFA  + LG+ G+E +   G L+ +E+  +E
Sbjct:  213 VVEAKAGGGSATLSMGQAACRFGLSLIKGLQGEANVIECAYVEGDGKHATFFAQPILLGKNGVETVLDYGKLSAFEQEAME 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_SHIFL (Malate dehydrogenase OS=Shigella flexneri GN=mdh PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 293          
The following BLAST results are available for this feature:
BLAST of EH406453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
MDH_MORJA2.463e-1450.00Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_VIBCH3.217e-1446.91Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_ENTS83.217e-1450.62Malate dehydrogenase OS=Enterobacter sakazakii (st... [more]
MDH_ECOSM3.217e-1449.38Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLU3.217e-1449.38Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_ECOL53.217e-1450.62Malate dehydrogenase OS=Escherichia coli O6:K15:H3... [more]
MDH_ECO7I3.217e-1449.38Malate dehydrogenase OS=Escherichia coli O7:K1 (st... [more]
MDH_AERS43.217e-1446.91Malate dehydrogenase OS=Aeromonas salmonicida (str... [more]
MDH_SHISS4.201e-1449.38Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIFL4.201e-1449.38Malate dehydrogenase OS=Shigella flexneri GN=mdh P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406453 ID=EH406453; Name=EH406453; organism=Citrus sinensis; type=EST; length=575bp
GTAGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATA
TGCTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATG
CCGGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCT
TTCTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTA
CTCACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAA
GAAAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAAT
GAGTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTT
TGCCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTT
CGTTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAA
AGATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGA
AGGGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTA
ATCAATTCAAAATCAGAGTTCATAC
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