EH406453

Overview
NameEH406453
Unique NameEH406453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 240
            VVEAK G GSATLSM  AAA+F  + +R L G+  VIEC Y         FFA  VRLG+ G+EE   +G L+++E+  L
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLIRALNGEKDVIECTYTEGDGEHARFFAQPVRLGKNGVEEYLPIGQLSDFEKQSL 292          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R ++G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRAMQGEKGVVECAYVEGDGHYARFFSQPLLLGKNGVEERQSIGKLSAFEQQALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R ++G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRAMQGEKGVVECAYVEGDGHYARFFSQPLLLGKNGVEERQSIGKLSAFEQQALE 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_SHEPA (Malate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 228
            VVEAK G GSATLSM  AA +F  + +RGL+G+A V+ECAYV        FFA  V LG+ G+EE+ + G ++ +E
Sbjct:  213 VVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVVLGKNGVEEVLAYGEVSAFE 288          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 240
            VVEAK G GSATLSM  AAA+F  + +R L+G++GV+ECAYV S      FFA  V LG+ G+ E   +G L+ +E+  L
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGESGVVECAYVESDGKHARFFAQPVLLGKDGVVERKDIGTLSAFEQNAL 292          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AA +F  + ++GL+G+A VIECAYV        FFA  + LG+ G+E +   G L+ +E+  ++
Sbjct:  213 VVEAKAGGGSATLSMGQAACRFGLSLIKGLQGEANVIECAYVEGDGKHATFFAQPILLGKNGVETVLDYGKLSAFEQEAMD 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSTFEQHSLD 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_SALSV (Malate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD 293          
BLAST of EH406453 vs. ExPASy Swiss-Prot
Match: MDH_SALPK (Malate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 243
            VVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+
Sbjct:  213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD 293          
The following BLAST results are available for this feature:
BLAST of EH406453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
MDH_PROMH5.487e-1448.75Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_KLEP75.487e-1448.15Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_KLEP35.487e-1448.15Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_SHEPA7.166e-1450.00Malate dehydrogenase OS=Shewanella pealeana (strai... [more]
MDH_PECCP7.166e-1450.00Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_AERHH7.166e-1445.68Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_SALTY9.359e-1448.15Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]
MDH_SALTI9.359e-1448.15Malate dehydrogenase OS=Salmonella typhi GN=mdh PE... [more]
MDH_SALSV9.359e-1448.15Malate dehydrogenase OS=Salmonella schwarzengrund ... [more]
MDH_SALPK9.359e-1448.15Malate dehydrogenase OS=Salmonella paratyphi A (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AG05FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406453 ID=EH406453; Name=EH406453; organism=Citrus sinensis; type=EST; length=575bp
GTAGTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATA
TGCTGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATG
CCGGTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCT
TTCTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGAATTGAGGAAATTTA
CTCACTTGGCCCATTGAATGAGTATGAGAGGGCTGGTTTGGAAAGGCAAA
GAAAGAGTTAGCGGGAAGCATTCAGAAGGGAGTCAGTTTTGTCAGGAAAT
GAGTAACCAATCACATGGTGACTAATGATAATGGTTGTGCTTTTGTTGTT
TGCCTCAAATATCTCAAGATTACTTTCCCCAGAATAAGAGGTAGGGTTTT
CGTTTTTCCATAATCAGATTGAATTAAGTTAGTTACAAAGAAGAAGCAAA
AGATTCATCTTAGTGGGGTTGGTTTGGTTCTTTTGATATTCTTGTAATGA
AGGGATAAAGAATATGTAGATGACGAACTGCCGCCTGTTTTATCATTTTA
ATCAATTCAAAATCAGAGTTCATAC
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